updated documentation

omnideconv · Oct 2, 2024 · 9593ff4 · 9593ff4
1 parent 01ae1f3
commit 9593ff4
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Showing 10 changed files with 149 additions and 20 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -25,10 +25,13 @@ Suggests:
     IlluminaHumanMethylationEPICmanifest,
     IlluminaHumanMethylation450kanno.ilmn12.hg19,
     IlluminaHumanMethylation450kmanifest,
-    testthat (>= 3.0.0)
+    testthat (>= 3.0.0),
+    knitr,
+    rmarkdown
 Remotes:
     omnideconv/MethylResolver
 Config/testthat/edition: 3
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.3.1
+VignetteBuilder: knitr
diff --git a/NAMESPACE b/NAMESPACE
@@ -3,7 +3,9 @@
 export(compare_results)
 export(deconvolute)
 export(deconvolution_methods)
+export(init_python)
 export(normalize_deconv_results)
+export(rename_cell_types)
 export(run_all_methods)
 export(run_epidish)
 export(run_flowsortedblood)
@@ -13,3 +15,4 @@ export(run_methylresolver)
 export(visualize_result_bar)
 export(visualize_result_box)
 export(visualize_results)
+import(reticulate)
diff --git a/man/compare_results.Rd b/man/compare_results.Rd
diff --git a/man/init_python.Rd b/man/init_python.Rd
diff --git a/man/rename_cell_types.Rd b/man/rename_cell_types.Rd
diff --git a/man/run_all_methods.Rd b/man/run_all_methods.Rd
diff --git a/man/run_meth_atlas.Rd b/man/run_meth_atlas.Rd
diff --git a/man/visualize_result_bar.Rd b/man/visualize_result_bar.Rd
diff --git a/man/visualize_result_box.Rd b/man/visualize_result_box.Rd
diff --git a/man/visualize_results.Rd b/man/visualize_results.Rd