edit of conversion fct #112
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| # The purpose of this action is to calculate the code coverage and add the results on codecov.io | |
| # codecov.io provides a badge showing the current coverage and generates coverage reports for each pull requests. | |
| # | |
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr | |
| needs: coverage | |
| - name: Manually install preprocessCore | |
| if: ${{ !(matrix.config.os == 'windows-latest' || matrix.config.os == 'macOS-latest') }} | |
| run: | | |
| git clone https://github.com/bmbolstad/preprocessCore.git | |
| cd preprocessCore | |
| R CMD INSTALL --configure-args="--disable-threading" . | |
| - name: Test coverage | |
| run: covr::codecov(quiet = FALSE) | |
| shell: Rscript {0} |