Code

Enforce taxon constraints#3102

Code

Merged

gouttegd merged 32 commits intomasterobophenotype/uberon:masterfrom new-taxon-constraint-checkobophenotype/uberon:new-taxon-constraint-checkCopy head branch name to clipboardNov 10, 2023

+367-95

Commits

Commits on Oct 27, 2023

• Import NCBITaxon with disjointness axioms.

  Show description for 5f9eaea
  gouttegd

  committed
  5f9eaea

• Update ncbitaxon_terms based on the -edit file.

  gouttegd

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  f27ac53

• Implement taxon constraint check in QC pipeline.

  Show description for 2b57baf
  gouttegd

  committed
  2b57baf

• remove wings never_in_taxon Sauropsida

  

  anitacaron

  authored and

  gouttegd

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  b71c786

• Making induction relation between suture and DM mammal-only

  

  anitacaron

  authored and

  gouttegd

  committed
  c865ba5

• Unsat fix: pterygoid bone NOT part of some suspensorium.

  Show description for 4700c98
  gouttegd

  committed
  4700c98

• Unsat fix: Relax taxon constraint on 'corpus luteum'.

  Show description for 79c1edc
  gouttegd

  committed
  79c1edc

• Unsat fix: Remove 'pericardial cavity present_in_taxon some Ciona'.

  Show description for 1b33f06
  gouttegd

  committed
  1b33f06

• Unsat fix: Detach 'vertebral element' from 'vertebral column'.

  Show description for feb14d0
  gouttegd

  committed
  feb14d0

• Unsat fix: philtrum NOT part_of some rhinarium.

  Show description for 151f02a
  gouttegd

  committed
  151f02a

• Unsat fix: Relax taxon constraint on 'neocortex'.

  Show description for c6edd6a
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  committed
  c6edd6a

• Remove mapping between UBERON:0006334 and HBA:4413.

  Show description for 33b9221
  gouttegd

  committed
  33b9221

• Unsat fix: Remove undesired taxon specifity on 'axial skeletal system'.

  Show description for 91c0fa7
  gouttegd

  committed
  91c0fa7

• Unsat fix: Relax taxon constraint on 'dermatocranium'.

  Show description for f25f8a2
  gouttegd

  committed
  f25f8a2

• Remove mapping between UBERON:0036215 and AEO:0000154.

  Show description for 88451e1
  gouttegd

  committed
  88451e1

• Unsat fix: Relax the taxon constraint on 'epithelium'.

  Show description for 97ed463
  gouttegd

  committed
  97ed463

• Unsat fix: Relax taxon constraint on 'choroidal guanine tapetum'.

  Show description for 448cc2b
  gouttegd

  committed
  448cc2b

• Unsat fix: Move misplace 'present in taxon' assertion.

  Show description for 92d4cbe
  gouttegd

  committed
  92d4cbe

• Unsat fix: Remove link between 'mouth' and 'respiratory system'.

  Show description for ed43459
  gouttegd

  committed
  ed43459

• Unsat fix: Relax taxon constraint on 'olivary pretectal nucleus'.

  Show description for 872bcf9
  gouttegd

  committed
  872bcf9

• Unsat fix: Remove link between 'artrhopod tibia' and 'insect leg'.

  Show description for c0a1b37
  gouttegd

  committed
  c0a1b37

• Unsat fix: Remove link between 'cranium' and 'skull'.

  Show description for 8449476
  gouttegd

  committed
  8449476

• Unsat fix: Remove the link between 'nasal skeleton' and 'facial skeleton'.

  Show description for adb2596
  gouttegd

  committed
  adb2596

• Unsat fix: Remove the link between 'mouth' and 'head'.

  Show description for 0fc2148
  gouttegd

  committed
  0fc2148

Commits on Oct 30, 2023

• Import both taxslim.owl and taxslim-disjoint-over-in-taxon.owl.

  Show description for 21fc13f
  gouttegd

  committed
  21fc13f

• Merge branch 'master' into new-taxon-constraint-check

  gouttegd

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  111cc22

• Re-generate the AEO bridge.

  Show description for dc3aa6a
  gouttegd

  committed
  dc3aa6a

Commits on Nov 2, 2023

• Post a comment explaining the TC violations.

  Show description for a9b6d7e
  gouttegd

  committed
  a9b6d7e

Commits on Nov 8, 2023

• Merge branch 'master' into new-taxon-constraint-check

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  6f22bc1

• Forcefully fix externally caused TC violations.

  Show description for 49501ee
  gouttegd

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  49501ee

• Do not update the HRA subset component upon MIR=false.

  Show description for 44421ae
  gouttegd

  committed
  44421ae

Commits on Nov 9, 2023

• update hra_subset component

  anitacaron

  committed
  c1ca725