v2.3.1 - Major Release
First HiCPro stable version available !
CHANGES IN VERSION 2.3.1
NEW FEATURES
o Update error and log reporting
o Change scripts folder
o Automatic installation process, using make install
o HiC-Pro can now be run using the bin/HiC-Pro bash script
o Add licence in all scripts
o Bug fixed in build_map - new option matrix_format asis/lower/upper/complete
o New version of ICE normalization
CHANGES IN VERSION 2.2.0b
NEW FEATURES
o Add ICE normalization
o Change mapping strategy. Local mapping is replaced by a global approach on trimmed reads
CHANGES IN VERSION 2.1.0b
NEW FEATURES
o Manage .fastq.gz files
o New pictures for mapping, pairing and valid pairs results
o Check cutSite for local mapped reads (mergeSAM.pl)
o New output option for overlapMapped2HiCFragment.py --samOutput
o Change read position used for fragment overlap (middle instead of 5' end to avoid cutting site sequencing)
o Remove file conversion sam to .aln
o Additional filters on MAPQ (mergeSAM.pl)
o Additional check to discard invalid reads pair (mergeSAM.pl)
CHANGES IN VERSION 2.0.0b
NEW FEATURES
o Major release by E. Viara
o New parallelized version of the pipeline. The workflow is parallelized by read pairs from the alignment, to the list of valid interactions
o New version of build_matrix tool written in C++
CHANGES IN VERSION 1.0.0
NEW FEATURES
o First version of the pipeline