[MODIF] Check if ice is in the path

nservant · Mar 31, 2020 · 63ead9b · 63ead9b
1 parent bb4f70b
commit 63ead9b
Showing 1 changed file with 8 additions and 1 deletion.
diff --git a/bin/HiC-Pro b/bin/HiC-Pro
@@ -181,7 +181,14 @@ if [[ ! -z $ALLELE_SPECIFIC_SNP && ! -r $ALLELE_SPECIFIC_SNP ]]; then
     die "ALLELE_SPECIFIC_SNP $ALLELE_SPECIFIC_SNP not found. Exit"
 fi
 
-
+## check if ice is in the PATH
+if [[ $MAKE_OPTS =~ "ice_norm" ]]; then
+    which ice > /dev/null;
+    if [ $? != "0" ]; then
+	echo -e "The 'ice' command is not in your path. Please check where the 'iced' python package has been installed and update your PATH !"
+	exit 1;
+    fi
+fi
 #####################
 ## Check step option
 #####################