Merge branch 'master' of https://github.com/nservant/HiC-Pro

nservant · May 14, 2015 · 1a1cca9 · 1a1cca9
2 parents 6097c6c + 86f3195
commit 1a1cca9
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diff --git a/NEWS b/NEWS
@@ -11,6 +11,8 @@ SIGNIFICANT USER-VISIBLE CHANGES
 
 BUG FIXES
 
+   o Add pyton path in ice_norm.sh
+
    o Bug fixed in iced genomic intervals symlink
 
    o Add missing ${PYTHON_PATH} variable in scripts

diff --git a/scripts/ice_norm.sh b/scripts/ice_norm.sh
@@ -54,7 +54,7 @@ do
 	    INPUT_MATRIX=${MAPC_OUTPUT}/matrix/${RES_FILE_NAME}/raw/${bsize}/${RES_FILE_NAME}_${bsize}.matrix
 	    ln -f -s ../../raw/${bsize}/${RES_FILE_NAME}_${bsize}_abs.bed ${NORM_DIR}/${bsize}/${RES_FILE_NAME}_${bsize}_abs.bed
 	    ln -f -s ../../raw/${bsize}/${RES_FILE_NAME}_${bsize}_ord.bed  ${NORM_DIR}/${bsize}/${RES_FILE_NAME}_${bsize}_ord.bed
-	    ${SCRIPTS}/ice --results_filename ${NORM_DIR}/${bsize}/${RES_FILE_NAME}_${bsize}_iced.matrix --filtering_perc ${SPARSE_FILTERING} --max_iter ${MAX_ITER} --eps ${EPS} --verbose 1 ${INPUT_MATRIX} > ${LDIR}/ice.log
+	    ${PYTHON_PATH}/python ${SCRIPTS}/ice --results_filename ${NORM_DIR}/${bsize}/${RES_FILE_NAME}_${bsize}_iced.matrix --filtering_perc ${SPARSE_FILTERING} --max_iter ${MAX_ITER} --eps ${EPS} --verbose 1 ${INPUT_MATRIX} > ${LDIR}/ice.log
 
 	done
     fi