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@@ -3,20 +3,48 @@ name = "oneroof" | |
| version = "0.1.0" | ||
| description = "Base-, Variant-, and Consensus-calling under One Proverbial Roof. Work in progress!" | ||
| authors = [ | ||
| { name = "Nicholas R. Minor", email = "[email protected]" }, | ||
| { name = "Andrew J. Lail Minor", email = "[email protected]" }, | ||
| { name = "Nicholas R. Minor", email = "[email protected]" }, | ||
| { name = "Andrew J. Lail", email = "[email protected]" }, | ||
| { name = "Annabelle Kalweit", email = "[email protected]" }, | ||
| ] | ||
| license = "MIT" | ||
| requires-python = ">= 3.10" | ||
| keywords = [ | ||
| "science", | ||
| "biology", | ||
| "research", | ||
| "bioinformatics", | ||
| "sequencing", | ||
| "genomics", | ||
| "virus", | ||
| "SARS-CoV-2", | ||
| "H5N1", | ||
| "influenze", | ||
| "haplotyping", | ||
| ] | ||
| classifiers = [ | ||
| "Development Status :: 3 - Alpha", | ||
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| "Intended Audience :: Science/Research", | ||
| "Topic :: Scientific/Engineering :: Bio-Informatics", | ||
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| "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", | ||
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| "Programming Language :: Python :: 3", | ||
| "Programming Language :: Python :: 3.10", | ||
| "Programming Language :: Python :: 3.11", | ||
| "Programming Language :: Python :: 3.12", | ||
| ] | ||
| dependencies = [ | ||
| "polars-lts-cpu", | ||
| "xlsxwriter", | ||
| "xlsx2csv", | ||
| "biopython", | ||
| "pysam", | ||
| "marimo", | ||
| "numpy", | ||
| "scipy", | ||
| "paramiko", | ||
| "polars-lts-cpu", | ||
| "xlsxwriter", | ||
| "xlsx2csv", | ||
| "biopython", | ||
| "pysam", | ||
| "marimo", | ||
| "numpy", | ||
| "scipy", | ||
| "paramiko", | ||
| ] | ||
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| [build-system] | ||
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@@ -63,18 +91,18 @@ cffi = ">=1.15.0,<1.17.0" | |
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| [tool.uv] | ||
| dev-dependencies = [ | ||
| "ipykernel>=6.29.5", | ||
| "ipython>=8.12.3", | ||
| "jupyter>=0.6.4", | ||
| "just>=0.8.162", | ||
| "mamba>=0.11.3", | ||
| "marimo[sql]>=0.8.14", | ||
| "pip>=24.2", | ||
| "pre-commit>=3.8.0", | ||
| "pytest>=8.3.3", | ||
| "quarto>=0.1.0", | ||
| "ruff>=0.6.4", | ||
| "tox>=4.18.1", | ||
| "ipykernel>=6.29.5", | ||
| "ipython>=8.12.3", | ||
| "jupyter>=0.6.4", | ||
| "just>=0.8.162", | ||
| "mamba>=0.11.3", | ||
| "marimo[sql]>=0.8.14", | ||
| "pip>=24.2", | ||
| "pre-commit>=3.8.0", | ||
| "pytest>=8.3.3", | ||
| "quarto>=0.1.0", | ||
| "ruff>=0.6.4", | ||
| "tox>=4.18.1", | ||
| ] | ||
| compile-bytecode = true | ||
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