I now know java has a set maximum integer size!

nrminor · Nov 7, 2024 · 10cc45a · 10cc45a
1 parent 96cc0cd
commit 10cc45a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/bbmap.nf b/modules/bbmap.nf
@@ -300,7 +300,7 @@ process QUALITY_TRIM {
 	bbduk.sh -Xmx2g in=`realpath ${reads}` \
 	out=${sample_id}_qtrimmed.fastq.gz \
 	qtrim=rl minavgquality=${params.min_qual} \
-	maxlength=${params.max_len} minlength=${params.min_len} \
+	minlength=${params.min_len} \
 	ordered threads=${task.cpus}
 	"""