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Tableinfo: analysis_type.tsv
abradyIGS edited this page Feb 11, 2022
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This table must not be manually created. Users should skip this, and all other tables marked "Built by script" in this summary, preparing only the rest of their datapackage's TSV files (those marked "Built by submitter") for submission. Once the "Built by submitter" tables are prepared, users should then use the C2M2 submission prep script to automatically build this table (and the other term tables) from the information in the user-built tables.
The analysis_type.tsv table will have as many rows as the number of unique OBI terms appearing in the analysis_type
column of file.tsv.
Field | Field Description | Required? | Field Value Type | Extra Info |
---|---|---|---|---|
id | A valid OBI term | Required | string |
OBI lookup service Example: OBI:0002763
|
name | A short, human-readable, machine-read-friendly label for this OBI term | Required | string | |
description | A human-readable description of this OBI term | Optional | string | |
synonyms | A list of synonyms for this term as identified by the OBI metadata | Optional | JSON array of strings | provide empty JSON array [] if value is null |
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Tutorials
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C2M2 Table Guide
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Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biofluid.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_biofluid.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv
- disease.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
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Table Summary