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TableInfo: subject_granularity.tsv
Amanda Charbonneau edited this page Feb 27, 2021
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| id | name | description |
|---|---|---|
| cfde_subject_granularity:0 | single organism | One organism |
| cfde_subject_granularity:1 | symbiont system | A mixed system of consisting of two or more organisms (symbionts) in symbiosis (living colocated in time and space): one such symbiont may optionally be identified as a host |
| cfde_subject_granularity:2 | host-pathogen system | A special case of a symbiont system consisting of one symbiont, designated as a host, plus one or more other symbionts acting to create or sustain disease within the host organism |
| cfde_subject_granularity:3 | microbiome | A symbiont system consisting of a collection of (potentially unknown or partially characterized) taxa, where the environment in which the system resides is well-characterized, but the taxonomic composition of the system may be unknown; optionally contains one symbiont specially identified as a host |
| cfde_subject_granularity:4 | cell line | A cell line derived from one or more species or strains |
| cfde_subject_granularity:5 | synthetic | A synthetic biological entity |
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Tutorials
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C2M2 Table Guide
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Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biofluid.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_biofluid.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv - disease.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
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Table Summary