nf-core/scrnaseq V 2.0.0 "Gray Nickel Beagle"

v2.0.0 - 2022-06-17 "Gray Nickel Beagle"

• Pipeline ported to dsl2
• Template update with latest nf-core/tools v2.1
• Added cellranger v.7.0.0 subworkflow
• Added full size tests

Fixes

• Make sure pipeline runs on multiple samples #77
• Fix issue where STARsolo always uses 10XV2 chemistry #60

What's Changed

• DSL2 version with working alevin workflow by @KevinMenden in #55
• Remove social preview image to use GitHub OpenGraph by @maxulysse in #57
• Added kallistobustools by @KevinMenden in #56
• Update to new file structure by @KevinMenden in #62
• Merge template update v2.1 by @ggabernet in #74
• DSL2 conversion by @ggabernet in #73
• Fix kallistobus didn't run with multiple samples by @grst in #77
• Fix alevinqc by @grst in #79
• Important! Template update for nf-core/tools v2.2 by @nf-core-bot in #76
• Update README.md by @medulka in #59
• Refactor workflows into subworkflows by @grst in #87
• Integrate cellranger workflow by @grst in #90
• Important! Template update for nf-core/tools v2.4 by @nf-core-bot in #101
• Fix Lint & Update latest modules by @apeltzer in #102
• Add AWS Full Size Tests by @apeltzer in #103
• Updating docs by @fmalmeida in #104
• transcriptome_fasta -> transcript_fasta by @leipzig in #97
• AWS test all profiles and fix publishdir by @ggabernet in #106
• fix full test by @ggabernet in #107
• add default to outdir as it was in schema by @fmalmeida in #108
• Fixes full tests with 10x references by @apeltzer in #109
• update CI and full size test by @ggabernet in #112
• Update nextflow.config by @fmalmeida in #111
• Fix for STAR chemistry issue #60 by @apeltzer in #113
• PR for Release 2.0.0 by @fmalmeida in #105

New Contributors

• @ggabernet made their first contribution in #74
• @grst made their first contribution in #77
• @medulka made their first contribution in #59
• @fmalmeida made their first contribution in #104
• @leipzig made their first contribution in #97

Full Changelog: 1.1.0...2.0.0