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Scatter ci #122

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wants to merge 4 commits into from
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Scatter ci #122

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edmundmiller
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@edmundmiller edmundmiller self-assigned this Oct 5, 2023
@edmundmiller edmundmiller changed the base branch from master to dev October 5, 2023 02:02
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github-actions bot commented Oct 5, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 7532677

+| ✅ 156 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   9 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 2.1.1
  • pipeline_todos - TODO string in README.md: Add full-sized test dataset and amend the paragraph below if applicable
  • pipeline_todos - TODO string in README.md: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.
  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file
  • pipeline_todos - TODO string in test_full.config: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA)
  • pipeline_todos - TODO string in test_full.config: Give any required params for the test so that command line flags are not needed
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in WorkflowNascent.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: LICENSE or LICENSE.md or LICENCE or LICENCE.md
  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml
  • files_unchanged - File ignored due to lint config: assets/email_template.html

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-10-05 04:05:11

@nf-core nf-core deleted a comment from github-actions bot Oct 5, 2023
@edmundmiller edmundmiller force-pushed the scatter-ci branch 2 times, most recently from a101a30 to d48abaf Compare October 5, 2023 02:33
@edmundmiller edmundmiller force-pushed the dev branch 2 times, most recently from 9bc50ae to 618e3a7 Compare March 5, 2024 16:19
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Closing https://github.com/askimed/nf-test/releases/tag/v0.9.0 implemented this natively.

@edmundmiller edmundmiller deleted the scatter-ci branch August 1, 2024 18:18
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nf-test Migration
Status: Done
Hackathon: November 2023
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