DSL2+ #312
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DSL2+ #312
GitHub Actions / JUnit Test Report
failed
Dec 10, 2024 in 0s
2 tests run, 0 passed, 0 skipped, 2 failed.
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Check failure on line 1 in Test Process SRATOOLS_FASTERQDUMP
github-actions / JUnit Test Report
Test Process SRATOOLS_FASTERQDUMP.Single-end
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.10.2
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b341db190724a4a54249d2821a1053eb.nf` [lonely_panini] DSL2 - revision: 93c80db4de
Downloading plugin [email protected]
Downloading plugin [email protected]
[43/7e7e72] Submitted process > UNTAR (SRR13255544.tar.gz)
ERROR ~ Error executing process > 'UNTAR (SRR13255544.tar.gz)'
Caused by:
Unable to evaluate output
Command executed:
echo $(tar --version 2>&1) | sed 's/^.*(GNU tar) //; s/ Copyright.*$//'
Command exit status:
1
Command output:
bash: -c: line 0: syntax error near unexpected token `('
bash: -c: line 0: `echo tar (GNU tar) 1.30'
Work dir:
/home/runner/work/fetchngs/fetchngs/~/tests/b341db190724a4a54249d2821a1053eb/work/43/7e7e72e6fa512d203a90ebd668eca2
-- Check '/home/runner/work/fetchngs/fetchngs/~/tests/b341db190724a4a54249d2821a1053eb/meta/nextflow.log' file for details
Nextflow stderr:
Check failure on line 1 in Test Process SRATOOLS_FASTERQDUMP
github-actions / JUnit Test Report
Test Process SRATOOLS_FASTERQDUMP.Paired-end
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.10.2
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-d51f7c9e710f09906b7fc40935dce6f6.nf` [zen_booth] DSL2 - revision: 1ba0b2e484
Staging foreign file: s3://ngi-igenomes/testdata/nf-core/modules/genomics/sarscov2/illumina/sra/SRR11140744.tar.gz
[b4/b73c45] Submitted process > UNTAR (SRR11140744.tar.gz)
ERROR ~ Error executing process > 'UNTAR (SRR11140744.tar.gz)'
Caused by:
Unable to evaluate output
Command executed:
echo $(tar --version 2>&1) | sed 's/^.*(GNU tar) //; s/ Copyright.*$//'
Command exit status:
1
Command output:
bash: -c: line 0: syntax error near unexpected token `('
bash: -c: line 0: `echo tar (GNU tar) 1.30'
Work dir:
/home/runner/work/fetchngs/fetchngs/~/tests/d51f7c9e710f09906b7fc40935dce6f6/work/b4/b73c457acc12319cf64db180adda1d
-- Check '/home/runner/work/fetchngs/fetchngs/~/tests/d51f7c9e710f09906b7fc40935dce6f6/meta/nextflow.log' file for details
Nextflow stderr:
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