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DSL2+ #29

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DSL2+

DSL2+ #29

Triggered via pull request December 10, 2024 16:58
@bentshermanbentsherman
synchronize #312
Status Success
Total duration 44s
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template_version_comment.yml

on: pull_request_target
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52 errors and 1 warning
nf.Parameters: default: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 2 of 2 assertions failed
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_IDS_TO_RUNINFO.Should run without failures: Test process: SRA_IDS_TO_RUNINFO#L1
Assertion failed: 1 of 2 assertions failed
Test Process CUSTOM_SRATOOLSNCBISETTINGS.Should run without failures: Test Process CUSTOM_SRATOOLSNCBISETTINGS#L1
java.lang.RuntimeException: Different Snapshot: --- /tmp/expected3105468537610802227jso +++ /tmp/found10470279264859259676json n @@ -1,5 @@ @@ +1,1 @@ ! 1 [ ! 1 null - 2 [ - 3 "versions.yml:md5,3d6ee88cc e1ee517e198633f062589a8" - 4 ] - 5 ]
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 2 of 2 assertions failed
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
Test Process CUSTOM_SRATOOLSNCBISETTINGS.Should run without failures: Test Process CUSTOM_SRATOOLSNCBISETTINGS#L1
java.lang.RuntimeException: Different Snapshot: --- /tmp/expected15956975120322049208js +++ /tmp/found18382659010028856547json on @@ -1,5 @@ @@ +1,1 @@ ! 1 [ ! 1 null - 2 [ - 3 "versions.yml:md5,3d6ee88cc e1ee517e198633f062589a8" - 4 ] - 5 ]
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 2 of 2 assertions failed
Test process: SRA_IDS_TO_RUNINFO.Should run without failures: Test process: SRA_IDS_TO_RUNINFO#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 2 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Paired-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch with sralite: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch/stub: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_FASTQ_FTP.Should run without failures: Test process: SRA_FASTQ_FTP#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 1 of 8 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test: Test pipeline#L1
Assertion failed: 6 of 6 assertions failed
Test Process UNTAR.test_untar: Test Process UNTAR#L1
Assertion failed: 2 of 2 assertions failed
Test Process UNTAR.test_untar_onlyfiles: Test Process UNTAR#L1
Assertion failed: 2 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test: Test pipeline#L1
Assertion failed: 6 of 6 assertions failed
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Paired-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 2 of 2 assertions failed
Test Process UNTAR.test_untar: Test Process UNTAR#L1
Assertion failed: 2 of 2 assertions failed
Test Process UNTAR.test_untar_onlyfiles: Test Process UNTAR#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 1 of 8 assertions failed
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 2 of 2 assertions failed
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch with sralite: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch/stub: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_FASTQ_FTP.Should run without failures: Test process: SRA_FASTQ_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test process: ASPERA_CLI.Should run without failures: Test process: ASPERA_CLI#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 2 of 2 assertions failed
Test process: ASPERA_CLI.Should run without failures: Test process: ASPERA_CLI#L1
Assertion failed: 1 of 2 assertions failed
template_version
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636