fix csv formatting

nf-cmgg · Mar 21, 2024 · ead4b12 · ead4b12
1 parent 7ae4401
commit ead4b12
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/assets/samplesheet.csv b/assets/samplesheet.csv
@@ -1,3 +1,3 @@
-sample  ,pool  ,sample_bam                                                                                                                     ,sample_bam_index                                                                                                                    ,snp_fastq_1                                                                                                                       ,snp_fastq_2                                                                                                                       ,snp_bam                                                                                                                          ,snp_bam_index
-sample1 ,pool1 ,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/exome/bam/sample1.sort.bam     ,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/exome/bam/sample1.sort.bam.bai      ,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/snp/fastq/snp_sample1_R1.fastq.gz ,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/snp/fastq/snp_sample1_R2.fastq.gz ,                                                                                                                                 ,
-sample2 ,pool1 ,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/exome/cram/sample2.sorted.cram ,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/exome/cram/sample2.sorted.cram.crai ,                                                                                                                                  ,                                                                                                                                  ,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/snp/cram/snp_sample2.sorted.cram ,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/snp/cram/snp_sample2.sorted.cram.crai
+sample,pool,sample_bam,sample_bam_index,snp_fastq_1,snp_fastq_2,snp_bam,snp_bam_index
+sample1,pool1,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/exome/bam/sample1.sort.bam,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/exome/bam/sample1.sort.bam.bai,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/snp/fastq/snp_sample1_R1.fastq.gz,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/snp/fastq/snp_sample1_R2.fastq.gz,,
+sample2,pool1,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/exome/cram/sample2.sorted.cram,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/exome/cram/sample2.sorted.cram.crai,,,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/snp/cram/snp_sample2.sorted.cram,https://github.com/nf-cmgg/test-datasets/raw/sampletracking/data/genomics/homo_sapiens/illumina/snp/cram/snp_sample2.sorted.cram.crai