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Add Python 3.13 to CI #9551

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Add Python 3.13 to CI

Add Python 3.13 to CI #9551

Triggered via pull request December 5, 2024 13:52
@JCGoranJCGoran
synchronize #3103
jelic/test_313
Status Failure
Total duration 54m 49s
Artifacts –

neuron-ci.yml

on: pull_request
Matrix: ci
Final CI
0s
Final CI
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9 errors and 64 warnings
ubuntu-20.04 - setuptools (CC=gcc-9 CXX=g++-9)
Process completed with exit code 1.
ubuntu-20.04 - cmake (CC=gcc-10 CXX=g++-10)
Process completed with exit code 1.
ubuntu-20.04 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Process completed with exit code 8.
ubuntu-20.04 - cmake (CC=gcc-10 CXX=g++-10)
Process completed with exit code 8.
ubuntu-20.04 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Process completed with exit code 8.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=addressaddress)
Process completed with exit code 8.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined)
Process completed with exit code 8.
ubuntu-24.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_MPI=OFF -DCORENRN_ENABLE_OPENMP=OFF -DNRN_ENABLE_RX3D=OFFthread)
Process completed with exit code 8.
Final CI
Process completed with exit code 1.
ubuntu-20.04 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Cache save failed.
ubuntu-20.04 - setuptools (CC=gcc-9 CXX=g++-9)
Cache save failed.
ubuntu-20.04 - cmake (CC=gcc-10 CXX=g++-10)
Cache save failed.
ubuntu-20.04 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Cache save failed.
ubuntu-20.04 - cmake (CC=gcc-10 CXX=g++-10)
Cache save failed.
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Cache save failed.
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
macOS's Gatekeeper has been disabled for this Cask
ubuntu-20.04 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Cache save failed.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=addressaddress)
Cache save failed.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined)
Cache save failed.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined): src/nrnpython/nrnpython.cpp#L198
'Py_NoSiteFlag' is deprecated [-Wdeprecated-declarations]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined): src/nrnpython/nrnpy_nrn.cpp#L180
'PyWeakref_GetObject' is deprecated [-Wdeprecated-declarations]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined): src/nrnpython/nrnpy_nrn.cpp#L218
'PyWeakref_GetObject' is deprecated [-Wdeprecated-declarations]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined): src/nrnpython/nrnpy_nrn.cpp#L1215
'PyWeakref_GetObject' is deprecated [-Wdeprecated-declarations]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined): src/nrnpython/rxd.cpp#L480
'const' qualifier on function type 'fptr' (aka 'void ()') has no effect [-Wignored-qualifiers]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined): src/nrnpython/rxd.cpp#L484
'const' qualifier on function type 'fptr' (aka 'void ()') has no effect [-Wignored-qualifiers]
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
macOS's Gatekeeper has been disabled for this Cask
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
Treating cmake as a formula. For the cask, use homebrew/cask/cmake or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
cmake 3.31.1 is already installed and up-to-date. To reinstall 3.31.1, run: brew reinstall cmake
macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
Cache save failed.
ubuntu-24.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_MPI=OFF -DCORENRN_ENABLE_OPENMP=OFF -DNRN_ENABLE_RX3D=OFFthread)
Cache save failed.
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
Cache save failed.
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
Cache save failed.
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
Cache save failed.
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (CC=gcc-10 CXX=g++-10)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Cache save failed.
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Cache save failed.
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
macOS's Gatekeeper has been disabled for this Cask
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
Cache save failed.
Final CI
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636