WIP: Alow model_singlepsr_noise to work with .tim TOA files that contain no pta/f flags #350
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: [ master, dev ] | |
| pull_request: | |
| branches: [ master, dev ] | |
| release: | |
| types: | |
| - published | |
| jobs: | |
| tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.7, 3.8, 3.9, '3.10'] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install non-python dependencies on mac | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew unlink gcc && brew link gcc | |
| brew install automake suite-sparse libomp | |
| curl -sSL https://raw.githubusercontent.com/vallis/libstempo/master/install_tempo2.sh | sh | |
| - name: Install non-python dependencies on linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install libsuitesparse-dev | |
| curl -sSL https://raw.githubusercontent.com/vallis/libstempo/master/install_tempo2.sh | sh | |
| - name: Install dependencies and package | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install flake8 pytest pytest-cov | |
| NO_MKL=1 python -m pip install -e . | |
| - name: Display Python, pip, setuptools, and all installed versions | |
| run: | | |
| python -c "import sys; print(f'Python {sys.version}')" | |
| python -c "import pip; print(f'pip {pip.__version__}')" | |
| python -c "import setuptools; print(f'setuptools {setuptools.__version__}')" | |
| python -m pip freeze | |
| - name: Run lint | |
| run: make lint | |
| - name: Test with pytest | |
| run: make test | |
| - name: Codecov | |
| uses: codecov/codecov-action@v3 | |
| #with: | |
| # fail_ci_if_error: true | |
| build: | |
| needs: [tests] | |
| name: Build source distribution | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'release' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install non-python dependencies on linux | |
| run: | | |
| sudo apt-get install libsuitesparse-dev | |
| curl -sSL https://raw.githubusercontent.com/vallis/libstempo/master/install_tempo2.sh | sh | |
| - name: Build | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install -r requirements.txt | |
| pip install -r requirements_dev.txt | |
| make dist | |
| - name: Test deployability | |
| run: | | |
| pip install twine | |
| twine check dist/* | |
| - name: Test the sdist | |
| run: | | |
| mkdir tmp | |
| cd tmp | |
| python -m venv venv-sdist | |
| venv-sdist/bin/python -m pip install --upgrade pip setuptools wheel | |
| venv-sdist/bin/python -m pip install ../dist/enterprise_extensions*.tar.gz | |
| venv-sdist/bin/python -c "import enterprise_extensions;print(enterprise_extensions.__version__)" | |
| - name: Test the wheel | |
| run: | | |
| mkdir tmp2 | |
| cd tmp2 | |
| python -m venv venv-wheel | |
| venv-wheel/bin/python -m pip install --upgrade pip setuptools | |
| venv-wheel/bin/python -m pip install ../dist/enterprise_extensions*.whl | |
| venv-wheel/bin/python -c "import enterprise_extensions;print(enterprise_extensions.__version__)" | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: dist | |
| path: dist/* | |
| deploy: | |
| needs: [tests, build] | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'release' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel twine | |
| - name: Download wheel/dist from build | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: dist | |
| path: dist | |
| - name: Build and publish | |
| env: | |
| TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }} | |
| TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }} | |
| run: | | |
| twine upload dist/* |