install mupif in workflow definition (and use uv there for the speedup) #291

	name: MuPIF DB

	on:
	push:
	branches: [ "**" ]
	pull_request:
	branches: [ "**" ]

	jobs:
	test-linux:
	runs-on: ubuntu-22.04
	strategy:
	fail-fast: false
	matrix:
	# needs quotes so that float 3.10 does not get interpreted as 3.1
	python-version: [ '3.10' ]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	wget -qO - https://www.mongodb.org/static/pgp/server-5.0.asc \| sudo apt-key add - && echo "deb http://repo.mongodb.org/apt/debian buster/mongodb-org/5.0 main" \| sudo tee /etc/apt/sources.list.d/mongodb-org-5.0.list
	sudo apt-get update && sudo apt-get -y install python3-wheel python3-pip mongodb-org
	python -m pip install -q uv
	uv pip install --system flake8
	uv pip install --system git+https://github.com/mupif/mupif.git@master
	uv pip install --system -r requirements.txt
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	python -m flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude=obsolete
	- name: Start MongoDB
	run: \|
	mkdir ./mongo-data
	/usr/bin/mongod --ipv6 --bind_ip_all --noauth --dbpath=./mongo-data --logpath=mongo.log &
	sleep 5 # mongo is required for our REST API
	cd mupifDB/api/edm; python dms3.py &
	sleep 5
	- name: pytest (native)
	timeout-minutes: 2
	run: \|
	python -m pytest .

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