Update vignettes to use ReadMrBayesTrees()
#287
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package or namespace load failed for ‘Hmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
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package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Install dependencies
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘bigQueryR’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘starsdata’, ‘BiocVersion’, ‘ganalytics’, ‘BiocParallel’, ‘spDataLarge’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘rnaturalearthhires’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘cmdstanr’, ‘glmmADMB’, ‘globaltest’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘M3C’, ‘sylly.de’, ‘sylly.es’, ‘INLA’, ‘ComplexHeatmap’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘snpStats’, ‘SwarmSVM’, ‘sangerseqR’, ‘ExactData’, ‘IRanges’, ‘RDCOMClient’, ‘gurobi’, ‘rrelaxiv’, ‘RTCGA.rnaseq’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘genefilter’, ‘sva’, ‘Icens’, ‘mosaicCalc’ are not available
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Install dependencies
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘Rgraphviz’ are not available
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