R-CMD-check #279
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| schedule: | |
| - cron: "24 06 * * 1" | |
| push: | |
| branches: | |
| - main | |
| - master | |
| paths-ignore: | |
| - "Meta**" | |
| - "memcheck**" | |
| - "docs**" | |
| - "**.git" | |
| - "**.json" | |
| - "**.md" | |
| - "**.yml" | |
| - "!**R-cmd-check.yml" | |
| - "**.R[dD]ata" | |
| - "**.Rpro*" | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| paths-ignore: | |
| - "Meta**" | |
| - "memcheck**" | |
| - "docs**" | |
| - "**.git" | |
| - "**.json" | |
| - "**.md" | |
| - "**.yml" | |
| - "!**R-cmd-check.yml" | |
| - "**.R[dD]ata" | |
| - "**.Rpro*" | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: '4.1', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} # Until TreeDist can slough phangorn | |
| #- {os: ubuntu-20.04, r: '3.6.3', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| - {os: ubuntu-latest, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| - {os: ubuntu-latest, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| R_REALLY_FORCE_SYMBOLS: true | |
| R_COMPILE_AND_INSTALL_PACKAGES: 'never' | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| if: runner.os != 'macOS' | |
| run: | | |
| install.packages('remotes') | |
| saveRDS( | |
| remotes::dev_package_deps(dependencies = c("soft", | |
| "Config/Needs/github-actions")), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), | |
| ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Query dependencies (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| install.packages('remotes') | |
| saveRDS( | |
| remotes::dev_package_deps(dependencies = c("soft", | |
| "Config/Needs/coverage", "Config/Needs/github-actions")) | |
| , ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), | |
| ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y libpoppler-glib-dev bwidget libavfilter-dev libtesseract-dev gdal-bin proj-bin libgdal-dev libproj-dev tesseract-ocr-eng libleptonica-dev tcl libgtk2.0-dev libgtk-3-dev | |
| sudo pkg-config --libs poppler-glib | |
| sudo pkg-config --cflags poppler-glib | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install system dependencies (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install libgit2 xquartz | |
| - name: Install callr (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| remotes::install_cran("callr") | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = c("soft", "Config/Needs/github-actions")) | |
| shell: Rscript {0} | |
| - name: Install coverage dependencies | |
| if: runner.os == 'macOS' | |
| run: | | |
| remotes::install_deps(dependencies = 'Config/Needs/coverage') | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| # - name: Upload check results | |
| # if: failure() | |
| # uses: actions/upload-artifact@main | |
| # with: | |
| # name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| # path: check | |
| - name: Test coverage | |
| if: runner.os == 'macOS' | |
| run: | | |
| covr::codecov() | |
| shell: Rscript {0} |