0.0.2

What's Changed

• Maintain the order of event from event_config while merging cohorts by @prenc in #46
• Added additional terminology. by @mmcdermott in #80
• Converted codes to strings for MEDS v0.3 compliance. by @mmcdermott in #83
• Updates file paths and pipeline configuration so final data and metadata outputs are written to MEDS v0.3 compatible file paths. by @mmcdermott in #86
• Fixed schema of parent_codes and description in the extract_code_metadata.py script. by @mmcdermott in #89
• Adds a finalize metadata stage that handles dataset.json, codes.parquet, and patient_splits.parquet retyping and MEDS verification. by @mmcdermott in #91
• This makes it so that if there is a dataset with a metadata/patient_splits.parquet file specified and a stage that specifies a restriction to a stage, it will filter the patients on the basis of that file. by @mmcdermott in #93
• Add a finalize_MEDS_data.py stage to validate and convert to the MEDS schema for the data files and ensure those work. by @mmcdermott in #94
• Use MEDS_BIRTH and MEDS_DEATH codes by default, per https://github.com/Medical-Event-Data-Standard/meds/blob/5f87c2fdcce7f8bab46af6f81ef7892fdee098c1/src/meds/schema.py#L26 by @mmcdermott in #96
• Full Compatability with MEDS v0.3. by @mmcdermott in #87
• Removes the unused ability to use sequences of compute functions. by @mmcdermott in #105
• Release candidate v0.0.2: MEDS v0.3 Compatability by @mmcdermott in #97

New Contributors

• @prenc made their first contribution in #46

Full Changelog: 0.0.1...v0.0.2