Add export for optimization module

[kristinagalik]

Closes #963

[kristinagalik]

Output from high_res_example_data

{
    "compatibility_graph": [
        {
            "donor_id": 1,
            "hla_compatibility_score": -2.0,
            "recipient_id": 1
        },
        {
            "donor_id": 1,
            "hla_compatibility_score": -1.0,
            "recipient_id": 2
        },
        {
            "donor_id": 2,
            "hla_compatibility_score": -1.0,
            "recipient_id": 1
        },
        {
            "donor_id": 2,
            "hla_compatibility_score": -2.0,
            "recipient_id": 2
        },
        {
            "donor_id": 3,
            "hla_compatibility_score": -1.0,
            "recipient_id": 1
        },
        {
            "donor_id": 3,
            "hla_compatibility_score": 0.0,
            "recipient_id": 2
        }
    ],
    "configuration": {
        "limitations": {
            "custom_algorithm_settings": {},
            "max_chain_length": 4,
            "max_cycle_length": 4
        },
        "scoring": [
            [
                {
                    "hla_compatibility_score": 1
                }
            ]
        ]
    },
    "pairs": [
        {
            "donor_id": 1,
            "recipient_id": 1
        },
        {
            "donor_id": 2,
            "recipient_id": 2
        },
        {
            "donor_id": 3,
            "recipient_id": null
        }
    ]
}

[kristinagalik]

@kubantjan nejake otazky

[kristinagalik]

works but tests blocked by mild-blue/swagger-unittest#10

[kubantjan]

@kristinagalik ten output me mate, co tam delaji -1 a -2 v hla_compatibility score? zaporny znamenaji, ze jsou to nevalidni dvojicky a vubec tam byt nemaji ne (mame tam neco jako -1 nevalidinic a -2 originalni donori) a ani jedno z toho tam nepatri, ten output by mel byt podle me jenom:

"compatibility_graph": [
{
"donor_id": 3,
"hla_compatibility_score": 0.0,
"recipient_id": 2
}
],

[kubantjan]

udelal jsem fix ve swagger tester mild-blue/swagger-unittest#11 verze 0.3.5 uz je nasazena na pypi, melo by stacit jen zvednout verzi.

[kubantjan]

pridal bych test, kde bude nejaky poradny output toho exportu a porovna se to jestli je to spravny, aby byl hezky videt ten example output (ted si myslim ze je to furt asi spatne, kdyz to vraci to skore -1?