Gtdb v9 #12
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| concurrency: | |
| # Cancel concurrent flows on PRs | |
| group: ci-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| formatting: | |
| permissions: | |
| contents: read # for actions/checkout to fetch code | |
| pull-requests: write # for marocchino/sticky-pull-request-comment to create or update PR comment | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: formatting | |
| create-args: black snakefmt | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - bioconda | |
| cache-environment: true | |
| - name: Check Black formatting | |
| shell: bash -el {0} | |
| run: black --check --diff . | |
| - name: Check Snakefmt formatting | |
| shell: bash -el {0} | |
| run: snakefmt --check --diff . | |
| - name: Comment PR | |
| if: github.event_name == 'pull_request' && failure() | |
| uses: marocchino/[email protected] | |
| with: | |
| message: | | |
| Please format your code with: | |
| - [black](https://black.readthedocs.io): `black .` | |
| - [snakefmt](https://github.com/snakemake/snakefmt): `snakefmt .` | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |