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prodigal to pyrodigal#2306

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meren wants to merge 17 commits intomastermerenlab/anvio:masterfrom prodigal-to-pyrodigalmerenlab/anvio:prodigal-to-pyrodigalCopy head branch name to clipboard

+241-53

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Commits on Jul 11, 2024

• a template for pyrodigal running class

  meren

  committed
  7c9ddc0

• Pyrodigal is among the gene callers

  meren

  committed
  7e5c909

• the gene calling uses pyrodigal by default

  meren

  committed
  62a33d2

• unused library

  meren

  committed
  69eb7eb

• more structure

  Show description for 8b01fd5
  meren

  committed
  8b01fd5

• Update pyrodigal.py

  meren

  committed
  7f5dcaf

• make sure pyrodigal is installed

  Show description for 0140a26
  meren

  committed
  0140a26

• requirements += pyrodigal

  meren

  committed
  5939999

Commits on Jul 12, 2024

• better structure with single/meta option

  meren

  committed
  ca549a1

• cosmetics

  meren

  committed
  3fc2dcd

• new community param for full gene calling report

  meren

  committed
  204d70b

• += --ful-gene-calling-report

  meren

  committed
  998070c

• enable full gene calling report when requested

  meren

  committed
  9cc8ee1

• update docs

  meren

  committed
  85013ac

Commits on Aug 29, 2024

• Merge branch 'master' into prodigal-to-pyrodigal

  Ge0rges

  authored
  c42d038

Commits on Sep 20, 2024

• pyrodigal-gv update in the codebase

  FlorianTrigodet

  committed
  7155ef2

Commits on Sep 24, 2024

• Removing ancient functions

  FlorianTrigodet

  committed
  b45d101