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marcellobeltrami/README.md

Hello there! 👋

My name is Marcello Beltrami and this is GitHub profile! I'm passionate about software development for bioinformatics, data analysis pipeline development, and 3D printing. Here you'll find a variety of projects I carried out because coding is just fun.

About Me

  • 🧬 Bioinformatician at the University of York (Mason Lab) with focus pipeline development, genomics data processing and analysis.
  • 🌐 Interested in exploring low level tool development for bioinformatics.
  • 🔭 Focus on performant and reproducible pipelines.
  • 🎓 Bachelor's degree in Microbiology. Master's degree in Bioinformatics

Projects and Languages

Here are a few projects I've been working on:

  • rocketfasta: A CLI parser for fasta files written in C++.
  • VCF annotator: A VCF annotator written in Python for with bindings to the Open Cravat API.
  • Hazexplorer: A nextflow pipeline to carry out bisulphite sequence analysis and variant calling.

Marcello's top languages

Get in Touch

Feel free to reach out if you have any questions, suggestions, consultancy requests or collaboration ideas!

Thanks for stopping by! 😊

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  1. VCF_annotator VCF_annotator Public

    Software aiming at making VCF annotation, filtering and comparison more accessible.

    Python

  2. Hazexplorer Hazexplorer Public

    This tool aims at analyzes methylation states from bisulphite sequencing data. This pipeline will take as input raw reads of Bisulphite Sequencing and output SNP calls.

    Shell

  3. Data_analyses Data_analyses Public

    A collection of data analyses made using Kaggle datasets and various techniques

    Jupyter Notebook

  4. Rust_projects Rust_projects Public

    A small collection of projects used to learn Rust programming language.

    C

  5. Rust_ML Rust_ML Public

    Project to learn machine learn from scratch. This includes functions to carry out basic Linear Algebra operations on vectors..

    Rust

  6. rocketfasta rocketfasta Public

    FASTA Parser CLI Tool developed in C++

    C++