Merge pull request #1191 from lsst-sqre/tickets/DM-48196

DM-48196: Update to Python 3.13

.github/workflows/ci.yaml

@@ -5,7 +5,7 @@ env:
   # reason to support multiple Python versions, so all actions are run with
   # this version. Quote the version to avoid interpretation as a floating
   # point number.
-  PYTHON_VERSION: "3.12"
+  PYTHON_VERSION: "3.13"
 
 "on":
   merge_group: {}

.github/workflows/periodic-ci.yaml

@@ -9,7 +9,7 @@ env:
   # reason to support multiple Python versions, so all actions are run with
   # this version. Quote the version to avoid interpretation as a floating
   # point number.
-  PYTHON_VERSION: "3.12"
+  PYTHON_VERSION: "3.13"
 
 "on":
   schedule:

Dockerfile

@@ -12,7 +12,7 @@
 #   - Runs as a non-root user.
 #   - Sets up the entrypoint and port.
 
-FROM python:3.12.8-slim-bookworm AS base-image
+FROM python:3.13.1-slim-bookworm AS base-image
 
 # Update system packages
 COPY scripts/install-base-packages.sh .
@@ -21,7 +21,7 @@ RUN ./install-base-packages.sh && rm ./install-base-packages.sh
 FROM base-image AS install-image
 
 # Install uv.
-COPY --from=ghcr.io/astral-sh/uv:0.5.8 /uv /bin/uv
+COPY --from=ghcr.io/astral-sh/uv:0.5.10 /uv /bin/uv
 
 # Determine the Node version that we want to install
 COPY .nvmrc /opt/.nvmrc

docs/documenteer.toml

@@ -74,6 +74,10 @@ nitpick_ignore = [
     # the combination of Sphinx extensions we're using confuse themselves and
     # there doesn't seem to be any way to fix this.
     ["py:class", "asyncio.locks.Lock"],
+    # Pydantic FilePath types create a reference to Path that is unresolved
+    # unless Path is imported locally, but the import is removed because the
+    # symbol isn't referenced.
+    ["py:class", "pathlib._local.Path"],
     # Cannot be represented by intersphinx.
     ["py:obj", "safir.pydantic._validators.validate_exactly_one_of.<locals>.validator"],
 ]

pyproject.toml

@@ -19,7 +19,7 @@ classifiers = [
     "Operating System :: POSIX",
     "Typing :: Typed",
 ]
-requires-python = ">=3.12"
+requires-python = ">=3.13"
 dependencies = [
     "alembic[tz]",
     "asyncpg",
@@ -69,7 +69,7 @@ gafaelfawr = "gafaelfawr.cli:main"
 
 [tool.black]
 line-length = 79
-target-version = ["py312"]
+target-version = ["py313"]
 
 [tool.coverage.run]
 parallel = true

requirements/dev.txt

@@ -574,83 +574,6 @@ graphviz==0.20.3 \
     --hash=sha256:09d6bc81e6a9fa392e7ba52135a9d49f1ed62526f96499325930e87ca1b5925d \
     --hash=sha256:81f848f2904515d8cd359cc611faba817598d2feaac4027b266aa3eda7b3dde5
     # via diagrams
-greenlet==3.1.1 ; (python_full_version < '3.13' and platform_machine == 'AMD64') or (python_full_version < '3.13' and platform_machine == 'WIN32') or (python_full_version < '3.13' and platform_machine == 'aarch64') or (python_full_version < '3.13' and platform_machine == 'amd64') or (python_full_version < '3.13' and platform_machine == 'ppc64le') or (python_full_version < '3.13' and platform_machine == 'win32') or (python_full_version < '3.13' and platform_machine == 'x86_64') \
-    --hash=sha256:0153404a4bb921f0ff1abeb5ce8a5131da56b953eda6e14b88dc6bbc04d2049e \
-    --hash=sha256:03a088b9de532cbfe2ba2034b2b85e82df37874681e8c470d6fb2f8c04d7e4b7 \
-    --hash=sha256:04b013dc07c96f83134b1e99888e7a79979f1a247e2a9f59697fa14b5862ed01 \
-    --hash=sha256:05175c27cb459dcfc05d026c4232f9de8913ed006d42713cb8a5137bd49375f1 \
-    --hash=sha256:09fc016b73c94e98e29af67ab7b9a879c307c6731a2c9da0db5a7d9b7edd1159 \
-    --hash=sha256:0bbae94a29c9e5c7e4a2b7f0aae5c17e8e90acbfd3bf6270eeba60c39fce3563 \
-    --hash=sha256:0fde093fb93f35ca72a556cf72c92ea3ebfda3d79fc35bb19fbe685853869a83 \
-    --hash=sha256:1443279c19fca463fc33e65ef2a935a5b09bb90f978beab37729e1c3c6c25fe9 \
-    --hash=sha256:1776fd7f989fc6b8d8c8cb8da1f6b82c5814957264d1f6cf818d475ec2bf6395 \
-    --hash=sha256:1d3755bcb2e02de341c55b4fca7a745a24a9e7212ac953f6b3a48d117d7257aa \
-    --hash=sha256:23f20bb60ae298d7d8656c6ec6db134bca379ecefadb0b19ce6f19d1f232a942 \
-    --hash=sha256:275f72decf9932639c1c6dd1013a1bc266438eb32710016a1c742df5da6e60a1 \
-    --hash=sha256:2846930c65b47d70b9d178e89c7e1a69c95c1f68ea5aa0a58646b7a96df12441 \
-    --hash=sha256:3319aa75e0e0639bc15ff54ca327e8dc7a6fe404003496e3c6925cd3142e0e22 \
-    --hash=sha256:346bed03fe47414091be4ad44786d1bd8bef0c3fcad6ed3dee074a032ab408a9 \
-    --hash=sha256:36b89d13c49216cadb828db8dfa6ce86bbbc476a82d3a6c397f0efae0525bdd0 \
-    --hash=sha256:37b9de5a96111fc15418819ab4c4432e4f3c2ede61e660b1e33971eba26ef9ba \
-    --hash=sha256:396979749bd95f018296af156201d6211240e7a23090f50a8d5d18c370084dc3 \
-    --hash=sha256:3b2813dc3de8c1ee3f924e4d4227999285fd335d1bcc0d2be6dc3f1f6a318ec1 \
-    --hash=sha256:411f015496fec93c1c8cd4e5238da364e1da7a124bcb293f085bf2860c32c6f6 \
-    --hash=sha256:47da355d8687fd65240c364c90a31569a133b7b60de111c255ef5b606f2ae291 \
-    --hash=sha256:48ca08c771c268a768087b408658e216133aecd835c0ded47ce955381105ba39 \
-    --hash=sha256:4afe7ea89de619adc868e087b4d2359282058479d7cfb94970adf4b55284574d \
-    --hash=sha256:4ce3ac6cdb6adf7946475d7ef31777c26d94bccc377e070a7986bd2d5c515467 \
-    --hash=sha256:4ead44c85f8ab905852d3de8d86f6f8baf77109f9da589cb4fa142bd3b57b475 \
-    --hash=sha256:54558ea205654b50c438029505def3834e80f0869a70fb15b871c29b4575ddef \
-    --hash=sha256:5e06afd14cbaf9e00899fae69b24a32f2196c19de08fcb9f4779dd4f004e5e7c \
-    --hash=sha256:62ee94988d6b4722ce0028644418d93a52429e977d742ca2ccbe1c4f4a792511 \
-    --hash=sha256:63e4844797b975b9af3a3fb8f7866ff08775f5426925e1e0bbcfe7932059a12c \
-    --hash=sha256:6510bf84a6b643dabba74d3049ead221257603a253d0a9873f55f6a59a65f822 \
-    --hash=sha256:667a9706c970cb552ede35aee17339a18e8f2a87a51fba2ed39ceeeb1004798a \
-    --hash=sha256:6ef9ea3f137e5711f0dbe5f9263e8c009b7069d8a1acea822bd5e9dae0ae49c8 \
-    --hash=sha256:7017b2be767b9d43cc31416aba48aab0d2309ee31b4dbf10a1d38fb7972bdf9d \
-    --hash=sha256:7124e16b4c55d417577c2077be379514321916d5790fa287c9ed6f23bd2ffd01 \
-    --hash=sha256:73aaad12ac0ff500f62cebed98d8789198ea0e6f233421059fa68a5aa7220145 \
-    --hash=sha256:77c386de38a60d1dfb8e55b8c1101d68c79dfdd25c7095d51fec2dd800892b80 \
-    --hash=sha256:7876452af029456b3f3549b696bb36a06db7c90747740c5302f74a9e9fa14b13 \
-    --hash=sha256:7939aa3ca7d2a1593596e7ac6d59391ff30281ef280d8632fa03d81f7c5f955e \
-    --hash=sha256:8320f64b777d00dd7ccdade271eaf0cad6636343293a25074cc5566160e4de7b \
-    --hash=sha256:85f3ff71e2e60bd4b4932a043fbbe0f499e263c628390b285cb599154a3b03b1 \
-    --hash=sha256:8b8b36671f10ba80e159378df9c4f15c14098c4fd73a36b9ad715f057272fbef \
-    --hash=sha256:93147c513fac16385d1036b7e5b102c7fbbdb163d556b791f0f11eada7ba65dc \
-    --hash=sha256:935e943ec47c4afab8965954bf49bfa639c05d4ccf9ef6e924188f762145c0ff \
-    --hash=sha256:94b6150a85e1b33b40b1464a3f9988dcc5251d6ed06842abff82e42632fac120 \
-    --hash=sha256:94ebba31df2aa506d7b14866fed00ac141a867e63143fe5bca82a8e503b36437 \
-    --hash=sha256:95ffcf719966dd7c453f908e208e14cde192e09fde6c7186c8f1896ef778d8cd \
-    --hash=sha256:98884ecf2ffb7d7fe6bd517e8eb99d31ff7855a840fa6d0d63cd07c037f6a981 \
-    --hash=sha256:99cfaa2110534e2cf3ba31a7abcac9d328d1d9f1b95beede58294a60348fba36 \
-    --hash=sha256:9e8f8c9cb53cdac7ba9793c276acd90168f416b9ce36799b9b885790f8ad6c0a \
-    --hash=sha256:a0dfc6c143b519113354e780a50381508139b07d2177cb6ad6a08278ec655798 \
-    --hash=sha256:b2795058c23988728eec1f36a4e5e4ebad22f8320c85f3587b539b9ac84128d7 \
-    --hash=sha256:b42703b1cf69f2aa1df7d1030b9d77d3e584a70755674d60e710f0af570f3761 \
-    --hash=sha256:b7cede291382a78f7bb5f04a529cb18e068dd29e0fb27376074b6d0317bf4dd0 \
-    --hash=sha256:b8a678974d1f3aa55f6cc34dc480169d58f2e6d8958895d68845fa4ab566509e \
-    --hash=sha256:b8da394b34370874b4572676f36acabac172602abf054cbc4ac910219f3340af \
-    --hash=sha256:c3a701fe5a9695b238503ce5bbe8218e03c3bcccf7e204e455e7462d770268aa \
-    --hash=sha256:c4aab7f6381f38a4b42f269057aee279ab0fc7bf2e929e3d4abfae97b682a12c \
-    --hash=sha256:ca9d0ff5ad43e785350894d97e13633a66e2b50000e8a183a50a88d834752d42 \
-    --hash=sha256:d0028e725ee18175c6e422797c407874da24381ce0690d6b9396c204c7f7276e \
-    --hash=sha256:d21e10da6ec19b457b82636209cbe2331ff4306b54d06fa04b7c138ba18c8a81 \
-    --hash=sha256:d5e975ca70269d66d17dd995dafc06f1b06e8cb1ec1e9ed54c1d1e4a7c4cf26e \
-    --hash=sha256:da7a9bff22ce038e19bf62c4dd1ec8391062878710ded0a845bcf47cc0200617 \
-    --hash=sha256:db32b5348615a04b82240cc67983cb315309e88d444a288934ee6ceaebcad6cc \
-    --hash=sha256:dcc62f31eae24de7f8dce72134c8651c58000d3b1868e01392baea7c32c247de \
-    --hash=sha256:dfc59d69fc48664bc693842bd57acfdd490acafda1ab52c7836e3fc75c90a111 \
-    --hash=sha256:e347b3bfcf985a05e8c0b7d462ba6f15b1ee1c909e2dcad795e49e91b152c383 \
-    --hash=sha256:e4d333e558953648ca09d64f13e6d8f0523fa705f51cae3f03b5983489958c70 \
-    --hash=sha256:ed10eac5830befbdd0c32f83e8aa6288361597550ba669b04c48f0f9a2c843c6 \
-    --hash=sha256:efc0f674aa41b92da8c49e0346318c6075d734994c3c4e4430b1c3f853e498e4 \
-    --hash=sha256:f1695e76146579f8c06c1509c7ce4dfe0706f49c6831a817ac04eebb2fd02011 \
-    --hash=sha256:f1d4aeb8891338e60d1ab6127af1fe45def5259def8094b9c7e34690c8858803 \
-    --hash=sha256:f406b22b7c9a9b4f8aa9d2ab13d6ae0ac3e85c9a809bd590ad53fed2bf70dc79 \
-    --hash=sha256:f6ff3b14f2df4c41660a7dec01045a045653998784bf8cfcb5a525bdffffbc8f
-    # via
-    #   -c requirements/main.txt
-    #   sqlalchemy
 h11==0.14.0 \
     --hash=sha256:8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d \
     --hash=sha256:e3fe4ac4b851c468cc8363d500db52c2ead036020723024a109d37346efaa761
@@ -1812,7 +1735,6 @@ typing-extensions==4.12.2 \
     --hash=sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8
     # via
     #   -c requirements/main.txt
-    #   anyio
     #   mypy
     #   myst-nb
     #   pydantic

requirements/main.txt

@@ -1622,7 +1622,6 @@ typing-extensions==4.12.2 \
     # via
     #   aiokafka
     #   alembic
-    #   anyio
     #   dataclasses-avroschema
     #   fastapi
     #   faststream