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1. RESPAN RESPAN Public

   Robust, accurate, and unbiased quantification of neurons and dendritic spines.

   Python 4 3

2. BrainJ BrainJ Public

   Fiji pipeline for automated serial section reconstruction and mouse brain analysis.

   ImageJ Macro 29 5

3. Brain_Visualization_and_Analysis Brain_Visualization_and_Analysis Public

   Scripts for brain visualization and analysis

   Python 6 2

4. CI_ImageAnalysisProgram CI_ImageAnalysisProgram Public

   Macros from Cellular Imaging's Image Analysis Program

   ImageJ Macro 3

5. Loci_Radial_Distribution_Analysis Loci_Radial_Distribution_Analysis Public

   For the detection of gene loci and subsequent 3D analysis of signal or other loci around this location.

   ImageJ Macro

6. Tooth_Registration Tooth_Registration Public

   ImageJ/Fiji analysis pipeline for tooth sections imaged by various modalities. Developed for Dumitriu Lab (Columbia)