bug fix

cortex-lab#70
kouichi-c-nakamura · Aug 4, 2023 · f522cf9 · f522cf9
1 parent 4de3d02
commit f522cf9
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/Browsing Functions/AtlasTransformBrowser.m b/Browsing Functions/AtlasTransformBrowser.m
@@ -779,8 +779,9 @@ function hotkeyFcn(f, slice_figure, keydata, allData, save_location, save_suffix
         disp('atlas location saved')
 
         % save transformed histology image
-        current_slice_image = imread(fullfile(save_location, [slice_name '.tif']));
-%         current_slice_image = flip(get(ud_slice.im, 'CData'),1);
+        % current_slice_image = imread(fullfile(save_location, [slice_name '.tif']));%TODO no imreisze() used, size mismatch creates a huge error in transform
+        current_slice_image = flip(get(ud_slice.im, 'CData'),1);
+
         R = imref2d(size(ud.ref));
         curr_slice_trans = imwarp(current_slice_image, ud.transform, 'OutputView',R);
         imwrite(curr_slice_trans, fullfile(folder_transformations, [slice_name '_transformed.tif']))