Merge pull request #83 from nmendiboure/dev

Small fix stats.py
koszullab · May 16, 2024 · 9f04d34 · 9f04d34
2 parents 6521756 + 4a24a06
commit 9f04d34
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/hicstuff/stats.py b/hicstuff/stats.py
@@ -45,7 +45,7 @@ def get_pipeline_stats(log_file):
 
     # 2. Number (% of total) of (un)mapped reads
     tot_mapped = [s for s in log_lines if re.search("mapped with Q ", s)][0]
-    tot_mapped = re.sub(".*Q >= 30 \(", "", tot_mapped)
+    tot_mapped = re.sub(".*Q >= \d+ \(", "", tot_mapped)
     tot_mapped = re.sub("/.*", "", tot_mapped)
     tot_mapped = int(float(tot_mapped))
     tot_unmapped = fastq_pairs*2 - tot_mapped