chore(master): release MPRAsnakeflow 0.2.0

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🤖 I have created a release beep boop

0.2.0 (2024-09-23)

⚠ BREAKING CHANGES

• pseudocounts where not used correctly when RNA or DNA set to 0
• DNA and RNA join correction
• pseudocounts where not used correctly when RNA or DNA set to 0
• see previous PR
• correct join in counts!

Features

• Add assignment_merge thread configuration (26e68c2)
• add formatters (e589376)
• better assignment BC statistics (00187e6)
• configurable min mapping quality (28045ae)
• extending figure width (8bf81c4)
• faster design check (315b402)
• fastq-join implementation (aaf5315)
• fewer print mesaaages in BCCounts (a1dc242)
• fewer print mesaaages in BCCounts (c689b5b)
• make filtering consistent (5f7a4c5)
• master variant table (6bda47c)
• new final output file with merged replicates (66cf017)
• only link assignment fasta when possible (d7d3822), closes #50
• realease please (62b0787)
• remove space, speedup BC extraction (70e9bd0)
• replace merging by NGmerge (0aa8cad)
• snakemake 8 compatibility (cf38ed9)
• snakemake 8 ready with workflow profile (d637e1f)
• statistic for assignment workflow (10c3b26)
• using reverese compelment BCs (d009a6c)

Bug Fixes

• batch size issue in sort (487ba8c)
• correct join in counts! (40b1ecb)
• correct use of assignment configs (58b64f1)
• corrected qc_report_assoc (afb0127)
• DNA and RNA join correction (7214743)
• filter config (38ee37e)
• issue with stats and asisgnment (d935fa1)
• master branch instead of main (a7c2453)
• missing final_counts_umi_samplerer in cluster conf (283c271)
• missing final_counts_umi_samplerer in cluster conf (8871dcd)
• plots per insert only used last experiment. not all. (c2fd82b)
• pseudocounts where not used correctly when RNA or DNA set to 0 (d2483f9)
• pseudocounts where not used correctly when RNA or DNA set to 0 (2ab3c62)
• remove illegal characters from reference (0ebee81)
• rename barcoe output header (635f043)
• rule make_master_tables fix (df42845)
• SCRIPTS_DIR changed from common.smk (f459f83)
• SCRIPTS_DIR changed from common.smk (2ceeac7)
• see previous PR (2c891e4)
• set master branch (5dbd8e6)
• statistic total counts (6381b92)
• typo in report (ace8cca)
• upgrade code to new pandas version (aaea236)
• using correct threads (6dcad7d)
• using multiple fastq inputs in counts (95935cf)

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