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name: Build and push a full docker image | ||
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on: | ||
workflow_dispatch: | ||
inputs: | ||
custom_tag: | ||
type: string | ||
description: Docker image tag | ||
required: true | ||
default: "latest" | ||
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jobs: | ||
build: | ||
runs-on: ubuntu-latest | ||
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steps: | ||
- uses: actions/checkout@v4 | ||
- name: Set up JDK 17 | ||
uses: actions/setup-java@v4 | ||
with: | ||
java-version: '17.0.10+7' | ||
distribution: 'temurin' | ||
cache: 'gradle' | ||
- name: Build with Gradle | ||
run: ./gradlew build -x test | ||
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docker-build-full: | ||
needs: [ build ] | ||
runs-on: ubuntu-latest | ||
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steps: | ||
- name: Create more disk space | ||
run: sudo rm -rf /usr/share/dotnet && sudo rm -rf /opt/ghc && sudo rm -rf "/usr/local/share/boost" && sudo rm -rf "$AGENT_TOOLSDIRECTORY" | ||
- uses: actions/checkout@v4 | ||
- name: Build and push | ||
id: docker_build | ||
uses: mr-smithers-excellent/docker-build-push@v5 | ||
with: | ||
username: ${{ secrets.DOCKERHUB_USERNAME_LFOPPIANO }} | ||
password: ${{ secrets.DOCKERHUB_TOKEN_LFOPPIANO }} | ||
image: lfoppiano/grobid-evaluation | ||
registry: docker.io | ||
pushImage: true | ||
tags: latest, ${{ github.event.inputs.custom_tag}} | ||
dockerfile: Dockerfile.evaluation | ||
- name: Image digest | ||
run: echo ${{ steps.docker_build.outputs.digest }} |
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## Grobid evaluation image | ||
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# https://grobid.readthedocs.io/en/latest/End-to-end-evaluation/ | ||
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# docker run -t --rm --init -p 8070:8070 -p 8071:8071 -v /home/lopez/grobid/grobid-home/config/grobid.properties:/opt/grobid/grobid-home/config/grobid.properties:ro grobid/grobid:0.8.0 | ||
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FROM lfoppiano/grobid:0.8.1 as runtime | ||
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# setting locale is likely useless but to be sure | ||
ENV LANG C.UTF-8 | ||
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USER root | ||
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RUN apt-get update && \ | ||
apt-get -y --no-install-recommends install unzip wget | ||
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WORKDIR /opt/grobid | ||
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# gradle | ||
COPY gradle/ ./gradle/ | ||
COPY gradlew ./ | ||
COPY gradle.properties ./ | ||
COPY build.gradle ./ | ||
COPY settings.gradle ./ | ||
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# source | ||
COPY grobid-core/ ./grobid-core/ | ||
COPY grobid-service/ ./grobid-service/ | ||
COPY grobid-trainer/ ./grobid-trainer/ | ||
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# Setting DL-powered configuration | ||
COPY grobid-home/config/grobid-full.yaml grobid-home/config/config.yaml | ||
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RUN rm -rf /opt/grobid/grobid-home/models/*-with_ELMo \ | ||
&& mkdir /opt/grobid/evaluation | ||
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# Download evaluation data | ||
WORKDIR /opt/grobid/evaluation | ||
RUN wget https://zenodo.org/records/3873702/files/biorxiv-10k-test-2000.zip -O biorxiv-10k-test-2000.zip \ | ||
&& unzip biorxiv-10k-test-2000.zip -d biorxiv-10k-test-2000 \ | ||
&& wget https://zenodo.org/records/7708580/files/eLife_984.zip -O eLife_984.zip \ | ||
&& unzip eLife_984.zip -d eLife_984 \ | ||
&& wget https://zenodo.org/records/7708580/files/PLOS_1000.zip -O PLOS_1000.zip \ | ||
&& unzip PLOS_1000.zip -d PLOS_1000 \ | ||
&& wget https://zenodo.org/records/7708580/files/PMC_sample_1943.zip -O PMC_sample_1943.zip \ | ||
&& unzip PMC_sample_1943.zip -d PMC_sample_1943 \ | ||
&& rm *.zip | ||
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#RUN wget -q https://zenodo.org/records/7708580/files/PMC_sample_1943.zip -O PMC_sample_1943.zip \ | ||
# && unzip PMC_sample_1943.zip -d PMC_sample_1943 \ | ||
# && rm *.zip | ||
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VOLUME ["/opt/grobid/grobid-home/tmp"] | ||
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WORKDIR /opt/grobid | ||
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CMD ["./gradlew", "jatsEval", "-Pp2t=/opt/grobid/evaluation/PMC_sample_1943","-Prun=1", "-PfileRatio=1"] | ||
CMD ["./gradlew", "jatsEval", "-Pp2t=/opt/grobid/evaluation/biorxiv-10k-test-2000","-Prun=1", "-PfileRatio=1"] | ||
CMD ["./gradlew", "jatsEval", "-Pp2t=/opt/grobid/evaluation/eLife_984","-Prun=1", "-PfileRatio=1"] | ||
CMD ["./gradlew", "jatsEval", "-Pp2t=/opt/grobid/evaluation/PLOS_1000","-Prun=1", "-PfileRatio=1"] | ||
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LABEL \ | ||
authors="The contributors" \ | ||
org.label-schema.name="datastet" \ | ||
org.label-schema.description="Image with DataStet service" \ | ||
org.label-schema.url="https://github.com/DataSeer/datastet" \ | ||
org.label-schema.version=${GROBID_VERSION} |