##Description This is a chef recipe to install Hadoop-BAM

#Requirements

• Hadoop cookbook (which also installs Java cookbook)
• Git cookbook

You can also prvide this requirements by your own and remove the dependencies from the recipe. Keep in mind that you need Java SDK and ant

##Recipes

• default - Install from source code
• precompiled - Install Hadoop-BAM from its latest precompiled jar

##Attributes

• default['hadoop-BAM-release-jar']: Download page for Hadoop-BAM jar
• default['hadoop-BAM-repo']: Hadoop-BAM git repository
• default['hadoop-BAM-version']: a source code revision (a tag, a branch or a commit)
• default['tmp']: Temporal directory for the installation
• default['install_dir']: Installation directory

##Usage Depending on how you have Chef installed, you'll use this recipe in one way or another. Here I describe how to run this recipe with chef-solo.

###Prepare the environment First, create a folder cookbooks where you'll put all your cookbooks. Clone this repository and its requirements there. You can clone my cookbooks repository with:

	git clone --recursive http://github.com/guillermo-carrasco/cookbooks.git

to pull all the cookbooks at once.

###Custom your installation Edit the attributes of the recipe you're going to use at your convinience.

###Run chef If you haven't done it already, create these two files:

solo.rb

file_cache_path "/tmp/chef-solo"
cookbook_path "<path to your cookbook folder>" (i.e /home/guillermo/cookbooks)

node.json

{
    "run_list": ["recipe[hadoop-BAM-cookbook]"]
}

And run chef-solo

sudo chef-solo -c solo.rb -j node.json

##Tested on Ubuntu 12.04

Shoud work on most linux distributions.

##Collaborations Please feel free of pull-request, open issues, and comment anything you want :-)