deploy: 1f28fb3

icecube · Jul 28, 2024 · 2d019c0 · 2d019c0
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diff --git a/_modules/index.html b/_modules/index.html
@@ -121,6 +121,7 @@ <h1>All modules for which code is available</h1>
 <li><a href="pisa/stages/likelihood/generalized_llh_params.html">pisa.stages.likelihood.generalized_llh_params</a></li>
 <li><a href="pisa/stages/osc/decay_params.html">pisa.stages.osc.decay_params</a></li>
 <li><a href="pisa/stages/osc/decoherence.html">pisa.stages.osc.decoherence</a></li>
+<li><a href="pisa/stages/osc/external.html">pisa.stages.osc.external</a></li>
 <li><a href="pisa/stages/osc/globes.html">pisa.stages.osc.globes</a></li>
 <li><a href="pisa/stages/osc/layers.html">pisa.stages.osc.layers</a></li>
 <li><a href="pisa/stages/osc/lri_params.html">pisa.stages.osc.lri_params</a></li>

diff --git a/_modules/pisa/stages/osc/external.html b/_modules/pisa/stages/osc/external.html
diff --git a/_modules/pisa/stages/osc/layers.html b/_modules/pisa/stages/osc/layers.html
diff --git a/_sources/pisa.stages.osc.rst.txt b/_sources/pisa.stages.osc.rst.txt
@@ -28,6 +28,14 @@ pisa.stages.osc.decoherence module
    :undoc-members:
    :show-inheritance:
 
+pisa.stages.osc.external module
+-------------------------------
+
+.. automodule:: pisa.stages.osc.external
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 pisa.stages.osc.globes module
 -----------------------------
 

diff --git a/genindex.html b/genindex.html
@@ -241,6 +241,8 @@ <h2 id="A">A</h2>
         <li><a href="pisa.stages.likelihood.html#pisa.stages.likelihood.generalized_llh_params.generalized_llh_params.apply_function">(pisa.stages.likelihood.generalized_llh_params.generalized_llh_params method)</a>
 </li>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.decoherence.decoherence.apply_function">(pisa.stages.osc.decoherence.decoherence method)</a>
+</li>
+        <li><a href="pisa.stages.osc.html#pisa.stages.osc.external.external.apply_function">(pisa.stages.osc.external.external method)</a>
 </li>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.globes.globes.apply_function">(pisa.stages.osc.globes.globes method)</a>
 </li>
@@ -567,6 +569,8 @@ <h2 id="C">C</h2>
         <li><a href="pisa.stages.flux.html#pisa.stages.flux.mceq_barr_red.mceq_barr_red.compute_function">(pisa.stages.flux.mceq_barr_red.mceq_barr_red method)</a>
 </li>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.decoherence.decoherence.compute_function">(pisa.stages.osc.decoherence.decoherence method)</a>
+</li>
+        <li><a href="pisa.stages.osc.html#pisa.stages.osc.external.external.compute_function">(pisa.stages.osc.external.external method)</a>
 </li>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.globes.globes.compute_function">(pisa.stages.osc.globes.globes method)</a>
 </li>
@@ -722,7 +726,7 @@ <h2 id="D">D</h2>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.osc_params.OscParams.deltacp">deltacp (pisa.stages.osc.osc_params.OscParams attribute)</a>
 
       <ul>
-        <li><a href="pisa.stages.osc.html#id6">(pisa.stages.osc.osc_params.OscParams property)</a>
+        <li><a href="pisa.stages.osc.html#id7">(pisa.stages.osc.osc_params.OscParams property)</a>
 </li>
       </ul></li>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.nsi_params.VacuumLikeNSIParams.deltansi">deltansi (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property)</a>
@@ -731,6 +735,12 @@ <h2 id="D">D</h2>
 
       <ul>
         <li><a href="pisa.stages.osc.html#id2">(pisa.stages.osc.layers.Layers property)</a>
+</li>
+      </ul></li>
+      <li><a href="pisa.stages.osc.html#pisa.stages.osc.layers.Layers.density_neutron_weighted">density_neutron_weighted (pisa.stages.osc.layers.Layers attribute)</a>
+
+      <ul>
+        <li><a href="pisa.stages.osc.html#id3">(pisa.stages.osc.layers.Layers property)</a>
 </li>
       </ul></li>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.scaling_params.Mass_scaling.density_scale">density_scale (pisa.stages.osc.scaling_params.Mass_scaling property)</a>
@@ -740,11 +750,11 @@ <h2 id="D">D</h2>
       <li><a href="pisa.core.html#pisa.core.param.DerivedParam.dependson">dependson (pisa.core.param.DerivedParam property)</a>
 </li>
       <li><a href="pisa.core.html#pisa.core.param.DerivedParam">DerivedParam (class in pisa.core.param)</a>
-</li>
-      <li><a href="pisa.core.html#pisa.core.detectors.Detectors">Detectors (class in pisa.core.detectors)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="pisa.core.html#pisa.core.detectors.Detectors">Detectors (class in pisa.core.detectors)</a>
+</li>
       <li><a href="pisa.utils.html#pisa.utils.mcSimRunSettings.DetMCSimRunsSettings">DetMCSimRunsSettings (class in pisa.utils.mcSimRunSettings)</a>
 </li>
       <li><a href="pisa.core.html#pisa.core.events.Data.digitize">digitize() (pisa.core.events.Data method)</a>
@@ -762,7 +772,7 @@ <h2 id="D">D</h2>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.layers.Layers.distance">distance (pisa.stages.osc.layers.Layers attribute)</a>
 
       <ul>
-        <li><a href="pisa.stages.osc.html#id3">(pisa.stages.osc.layers.Layers property)</a>
+        <li><a href="pisa.stages.osc.html#id4">(pisa.stages.osc.layers.Layers property)</a>
 </li>
       </ul></li>
       <li><a href="pisa.core.html#pisa.core.detectors.Detectors.distribution_makers">distribution_makers (pisa.core.detectors.Detectors property)</a>
@@ -772,7 +782,7 @@ <h2 id="D">D</h2>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.osc_params.OscParams.dm_matrix">dm_matrix (pisa.stages.osc.osc_params.OscParams attribute)</a>
 
       <ul>
-        <li><a href="pisa.stages.osc.html#id7">(pisa.stages.osc.osc_params.OscParams property)</a>
+        <li><a href="pisa.stages.osc.html#id8">(pisa.stages.osc.osc_params.OscParams property)</a>
 </li>
       </ul></li>
       <li><a href="pisa.scripts.html#pisa.scripts.test_flux_weights.do_1d_2d_bartol_test">do_1d_2d_bartol_test() (in module pisa.scripts.test_flux_weights)</a>
@@ -858,7 +868,7 @@ <h2 id="E">E</h2>
       <ul>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.nsi_params.StdNSIParams.eps_matrix">(pisa.stages.osc.nsi_params.StdNSIParams attribute)</a>
 </li>
-        <li><a href="pisa.stages.osc.html#id5">(pisa.stages.osc.nsi_params.StdNSIParams property)</a>
+        <li><a href="pisa.stages.osc.html#id6">(pisa.stages.osc.nsi_params.StdNSIParams property)</a>
 </li>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.nsi_params.VacuumLikeNSIParams.eps_matrix">(pisa.stages.osc.nsi_params.VacuumLikeNSIParams property)</a>
 </li>
@@ -871,14 +881,14 @@ <h2 id="E">E</h2>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.nsi_params.VacuumLikeNSIParams.eps_mumu">(pisa.stages.osc.nsi_params.VacuumLikeNSIParams property)</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.nsi_params.StdNSIParams.eps_mutau">eps_mutau (pisa.stages.osc.nsi_params.StdNSIParams property)</a>
 
       <ul>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.nsi_params.VacuumLikeNSIParams.eps_mutau">(pisa.stages.osc.nsi_params.VacuumLikeNSIParams property)</a>
 </li>
       </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.nsi_params.VacuumLikeNSIParams.eps_prime">eps_prime (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property)</a>
 </li>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.nsi_params.VacuumLikeNSIParams.eps_scale">eps_scale (pisa.stages.osc.nsi_params.VacuumLikeNSIParams property)</a>
@@ -920,6 +930,8 @@ <h2 id="E">E</h2>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.layers.extCalcLayers">extCalcLayers() (in module pisa.stages.osc.layers)</a>
 </li>
       <li><a href="pisa.core.html#pisa.core.param.ParamSet.extend">extend() (pisa.core.param.ParamSet method)</a>
+</li>
+      <li><a href="pisa.stages.osc.html#pisa.stages.osc.external.external">external (class in pisa.stages.osc.external)</a>
 </li>
       <li><a href="pisa.scripts.html#pisa.scripts.make_nufit_theta23_spline_priors.extract_vals">extract_vals() (in module pisa.scripts.make_nufit_theta23_spline_priors)</a>
 </li>
@@ -1888,25 +1900,25 @@ <h2 id="M">M</h2>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.osc_params.OscParams.mix_matrix">mix_matrix (pisa.stages.osc.osc_params.OscParams attribute)</a>
 
       <ul>
-        <li><a href="pisa.stages.osc.html#id8">(pisa.stages.osc.osc_params.OscParams property)</a>
+        <li><a href="pisa.stages.osc.html#id9">(pisa.stages.osc.osc_params.OscParams property)</a>
 </li>
       </ul></li>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.osc_params.OscParams.mix_matrix_complex">mix_matrix_complex (pisa.stages.osc.osc_params.OscParams attribute)</a>
 
       <ul>
-        <li><a href="pisa.stages.osc.html#id9">(pisa.stages.osc.osc_params.OscParams property)</a>
+        <li><a href="pisa.stages.osc.html#id10">(pisa.stages.osc.osc_params.OscParams property)</a>
 </li>
       </ul></li>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.osc_params.OscParams.mix_matrix_reparam">mix_matrix_reparam (pisa.stages.osc.osc_params.OscParams attribute)</a>
 
       <ul>
-        <li><a href="pisa.stages.osc.html#id10">(pisa.stages.osc.osc_params.OscParams property)</a>
+        <li><a href="pisa.stages.osc.html#id11">(pisa.stages.osc.osc_params.OscParams property)</a>
 </li>
       </ul></li>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.osc_params.OscParams.mix_matrix_reparam_complex">mix_matrix_reparam_complex (pisa.stages.osc.osc_params.OscParams attribute)</a>
 
       <ul>
-        <li><a href="pisa.stages.osc.html#id11">(pisa.stages.osc.osc_params.OscParams property)</a>
+        <li><a href="pisa.stages.osc.html#id12">(pisa.stages.osc.osc_params.OscParams property)</a>
 </li>
       </ul></li>
       <li><a href="pisa.utils.html#pisa.utils.fileio.mkdir">mkdir() (in module pisa.utils.fileio)</a>
@@ -2042,6 +2054,8 @@ <h2 id="M">M</h2>
         <li><a href="pisa.stages.osc.html#module-pisa.stages.osc.decay_params">pisa.stages.osc.decay_params</a>
 </li>
         <li><a href="pisa.stages.osc.html#module-pisa.stages.osc.decoherence">pisa.stages.osc.decoherence</a>
+</li>
+        <li><a href="pisa.stages.osc.html#module-pisa.stages.osc.external">pisa.stages.osc.external</a>
 </li>
         <li><a href="pisa.stages.osc.html#module-pisa.stages.osc.globes">pisa.stages.osc.globes</a>
 </li>
@@ -2215,7 +2229,7 @@ <h2 id="N">N</h2>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.layers.Layers.n_layers">n_layers (pisa.stages.osc.layers.Layers attribute)</a>
 
       <ul>
-        <li><a href="pisa.stages.osc.html#id4">(pisa.stages.osc.layers.Layers property)</a>
+        <li><a href="pisa.stages.osc.html#id5">(pisa.stages.osc.layers.Layers property)</a>
 </li>
       </ul></li>
       <li><a href="pisa.core.html#pisa.core.binning.MultiDimBinning.name">name (pisa.core.binning.MultiDimBinning property)</a>
@@ -2925,6 +2939,13 @@ <h2 id="P">P</h2>
 
       <ul>
         <li><a href="pisa.stages.osc.html#module-pisa.stages.osc.decoherence">module</a>
+</li>
+      </ul></li>
+      <li>
+    pisa.stages.osc.external
+
+      <ul>
+        <li><a href="pisa.stages.osc.html#module-pisa.stages.osc.external">module</a>
 </li>
       </ul></li>
       <li>
@@ -3011,15 +3032,15 @@ <h2 id="P">P</h2>
         <li><a href="pisa.stages.osc.html#module-pisa.stages.osc.scaling_params">module</a>
 </li>
       </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li>
     pisa.stages.osc.two_nu_osc
 
       <ul>
         <li><a href="pisa.stages.osc.html#module-pisa.stages.osc.two_nu_osc">module</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li>
     pisa.stages.pid
 
@@ -3962,6 +3983,8 @@ <h2 id="S">S</h2>
         <li><a href="pisa.stages.likelihood.html#pisa.stages.likelihood.generalized_llh_params.generalized_llh_params.setup_function">(pisa.stages.likelihood.generalized_llh_params.generalized_llh_params method)</a>
 </li>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.decoherence.decoherence.setup_function">(pisa.stages.osc.decoherence.decoherence method)</a>
+</li>
+        <li><a href="pisa.stages.osc.html#pisa.stages.osc.external.external.setup_function">(pisa.stages.osc.external.external method)</a>
 </li>
         <li><a href="pisa.stages.osc.html#pisa.stages.osc.globes.globes.setup_function">(pisa.stages.osc.globes.globes method)</a>
 </li>
@@ -4552,10 +4575,12 @@ <h2 id="W">W</h2>
 </li>
       <li><a href="pisa.stages.osc.html#pisa.stages.osc.layers.Layers.weight_density_to_YeFrac">weight_density_to_YeFrac() (pisa.stages.osc.layers.Layers method)</a>
 </li>
-      <li><a href="pisa.stages.aeff.html#pisa.stages.aeff.weight_hnl.weight_hnl">weight_hnl (class in pisa.stages.aeff.weight_hnl)</a>
+      <li><a href="pisa.stages.osc.html#pisa.stages.osc.layers.Layers.weight_density_to_YnFrac">weight_density_to_YnFrac() (pisa.stages.osc.layers.Layers method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="pisa.stages.aeff.html#pisa.stages.aeff.weight_hnl.weight_hnl">weight_hnl (class in pisa.stages.aeff.weight_hnl)</a>
+</li>
       <li><a href="pisa.core.html#pisa.core.binning.MultiDimBinning.weighted_bin_volumes">weighted_bin_volumes() (pisa.core.binning.MultiDimBinning method)</a>
 </li>
       <li><a href="pisa.core.html#pisa.core.binning.OneDimBinning.weighted_bin_widths">weighted_bin_widths (pisa.core.binning.OneDimBinning property)</a>

diff --git a/objects.inv b/objects.inv
diff --git a/pisa.html b/pisa.html
@@ -861,6 +861,7 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Link to this hea
 <li class="toctree-l4"><a class="reference internal" href="pisa.stages.osc.html#submodules">Submodules</a></li>
 <li class="toctree-l4"><a class="reference internal" href="pisa.stages.osc.html#module-pisa.stages.osc.decay_params">pisa.stages.osc.decay_params module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="pisa.stages.osc.html#module-pisa.stages.osc.decoherence">pisa.stages.osc.decoherence module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="pisa.stages.osc.html#module-pisa.stages.osc.external">pisa.stages.osc.external module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="pisa.stages.osc.html#module-pisa.stages.osc.globes">pisa.stages.osc.globes module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="pisa.stages.osc.html#module-pisa.stages.osc.layers">pisa.stages.osc.layers module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="pisa.stages.osc.html#module-pisa.stages.osc.lri_params">pisa.stages.osc.lri_params module</a></li>