MS-EmpiRe

Mass Spectrometry analysis using Empirical and Replicate based statistics.

MS-EmpiRe is a R package for quantitative analyses of Mass Spectrometry proteomics data. It allows highly sensitive and specific identitification of differentially abundant proteins between different experimental conditions.

Installation

Dependencies

MS-EmpiRe requires the R package Biobase from Bioconductor. Biobase can be installed from the R command line using the following commands:

source("https://bioconductor.org/biocLite.R")
biocLite("Biobase")

Installing MS-EmpiRe

You can install MS-EmpiRe directly from github using the R package devtools.

Installing devtools:

install.packages("devtools")

Loading devtools:

library(devtools)

Installing MS-EmpiRe:

install_github("zimmerlab/MS-EmpiRe")

Loading MS-EmpiRe:

library(msEmpiRe)

License

MS-EmpiRe is released under the GNU Affero General Public License. See LICENSE for further details.