version 1.2.6 updates

updated autocorrelation function
gmiaslab · Mar 16, 2021 · c68e0a3 · c68e0a3
1 parent c8c9ac2
commit c68e0a3
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Showing 5 changed files with 12 additions and 7 deletions.
diff --git a/ChangeLog.md b/ChangeLog.md
@@ -1,5 +1,10 @@
+- 1.2.6
+
+   * Updated autocorrelation computation function to improve handling of nan values.
+
 - 1.2.5
-   * Updated visibilityGraphCommunityDetection functions (correction for division by zero in community calculations)
+
+   * Updated visibilityGraphCommunityDetection functions (correction for division by zero in community calculations).
 
 - 1.2.4
 

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -46,9 +46,9 @@ def setup(app):
 author = 'S. Domanskyi, C. Piermarocchi, G. Mias'
 
 # The short X.Y version
-version = '1.2.5'
+version = '1.2.6'
 # The full version, including alpha/beta/rc tags
-release = '1.2.5'
+release = '1.2.6'
 
 
 # -- General configuration ---------------------------------------------------

diff --git a/pyiomica/__init__.py b/pyiomica/__init__.py
@@ -8,7 +8,7 @@
     For additional information visit: https://github.com/gmiaslab/pyiomica and https://mathiomica.org by G. Mias Lab
 """
 
-print("Loading PyIOmica 1.2.5 (https://github.com/gmiaslab/pyiomica by G. Mias Lab)")
+print("Loading PyIOmica 1.2.6 (https://github.com/gmiaslab/pyiomica by G. Mias Lab)")
 
 
 from .globalVariables import *

diff --git a/pyiomica/coreFunctions.py b/pyiomica/coreFunctions.py
@@ -203,7 +203,7 @@ def autocorrelation(inputTimes, inputData, inputSetTimes, UpperFrequencyFactor=1
         result = autocorrelation(inputTimes, inputData, inputSetTimes)
     """
     # in case the values passed contain nan entries, theses are removed - this could affect window estimation and ensuing functions.
-    inputTimes = inputTimes[~np.isnan(inputData)
+    inputTimes = inputTimes[~np.isnan(inputData)]
     inputData = inputData[~np.isnan(inputData)]
     def InverseAutocovariance(inputTimes, inputData, inputSetTimes, UpperFrequencyFactor=1):
 

diff --git a/setup.py b/setup.py
@@ -12,7 +12,7 @@
 setup(
     name='pyiomica',
     packages=find_packages(),
-    version='1.2.5',
+    version='1.2.6',
     description='Omics Analysis Tool Suite',
     long_description_content_type="text/markdown",
     long_description=long_description,
@@ -21,7 +21,7 @@
     author_email='[email protected]',
     license='MIT',
     url='https://github.com/gmiaslab/pyiomica',
-    download_url='https://github.com/gmiaslab/pyiomica/archive/1.2.5.tar.gz',
+    download_url='https://github.com/gmiaslab/pyiomica/archive/1.2.6.tar.gz',
     keywords=['omics', 'longitudinal','bioinformatics'],
     classifiers=[
         'License :: OSI Approved :: MIT License',