CI Zotero Backup #932
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| name: CI Zotero Backup | |
| on: | |
| push: | |
| branches: [master] | |
| schedule: | |
| # More info under: https://docs.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events | |
| # Setup: Monday to Friday at 5:30am UTC | |
| - cron: '30 5 * * *' | |
| env: | |
| ZB_SEARCH_PREFIX_URI: groups/2480461 | |
| ZB_OUT_DIR: "data/ag-gipp" | |
| ZB_FILE: "data/ag-gipp/latest.json" | |
| ZB_VERSION_FILE: "data/ag-gipp/.last-modified-version" | |
| ZB_PYTHON: python | |
| ZB_LOG_LEVEL: INFO | |
| PYTHONIOENCODING: "utf-8" | |
| ZB_SEARCH_TAG: "" | |
| jobs: | |
| backup: | |
| name: Backup Zotero | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Zotero backup repo | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: 'false' | |
| - name: Checkout private data submodule | |
| env: | |
| DATA_SSH_KEY: ${{ secrets.BACKUP_DATA_ZOTERO_REPO_KEY }} | |
| run: | | |
| mkdir -p $HOME/.ssh | |
| echo "$DATA_SSH_KEY" > $HOME/.ssh/data_deploy.key | |
| chmod 600 $HOME/.ssh/data_deploy.key | |
| export GIT_SSH_COMMAND="ssh -i $HOME/.ssh/data_deploy.key" | |
| git submodule update --init --recursive --remote --rebase | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.7' | |
| - name: Install python requirements | |
| run: pip install -r requirements.txt | |
| - name: Download Zotero data | |
| run: python ./download.py | |
| env: | |
| ZB_API_KEY: ${{ secrets.ZB_API_KEY }} | |
| - name: Check data consistency | |
| run: python ./consistency-report.py "$ZB_FILE" > "$ZB_OUT_DIR/report.md" | |
| - name: Extract decentralized open science publist | |
| run: python ./extract-bibtex.py "$ZB_FILE" decentralized_open_science > "bib/decentralized_open_science.bib" | |
| - name: Create decentralized open science publist | |
| run: | | |
| cd bib | |
| ./support/pubAll.sh decentralized_open_science | |
| cd .. | |
| - name: Extract moritz publist | |
| run: python ./extract-bibtex.py "$ZB_FILE" \!ms_author > "bib/list.bib" | |
| - name: Create moritz publist | |
| run: | | |
| cd bib | |
| ./support/pubAll.sh list | |
| cd .. | |
| - name: Push updates | |
| # Environment variables do not survive steps. The exported GIT_SSH_COMMAND | |
| # from above does not exist here. Hence, we first update the link and after that | |
| # set the GIT_SSH_COMMAND again | |
| run: | | |
| git config --global user.name 'BinBot' | |
| git config --global user.email '[email protected]' | |
| cd data | |
| export GIT_SSH_COMMAND="ssh -i $HOME/.ssh/data_deploy.key" | |
| git add -A | |
| git commit -am "[skip ci] Update backup data (build ${GITHUB_RUN_ID})" | |
| git push origin HEAD:master | |
| cd .. | |
| cd bib | |
| git add -A | |
| git commit -am "[skip ci] Update bib data (build ${GITHUB_RUN_ID})" || true | |
| git push origin HEAD:master || true | |
| cd .. | |
| unset GIT_SSH_COMMAND | |
| git add -A | |
| git commit -am "[skip ci] Update link to backup data (build ${GITHUB_RUN_ID})" | |
| git push | |
| - name: Notify Collaborators on Failure | |
| if: hashFiles('$ZB_OUT_DIR/report.md') != '' | |
| uses: dawidd6/action-send-mail@v3 | |
| with: | |
| server_address: ${{ secrets.NOTIF_MAIL_SERVER }} | |
| server_port: 465 | |
| username: ${{ secrets.NOTIF_MAIL_USER }} | |
| password: ${{ secrets.NOTIF_MAIL_PW }} | |
| subject: "GitHub CI Zotero Backup Report ${{ job.status }}" | |
| html_body: '<p>The GitHub workflow ${{ github.workflow }} in ${{ github.repository }} finished on <b>${{ job.status }}</b></p><p>Further details can be accessed at the <a href="https://github.com/ag-gipp/zotero-backup/actions">GitHub CI overview page</a>.</p><p><b>Detailed Reasons:</b><br>Event causing the failure: ${{ github.event_name }}<br>Author: ${{ github.event.commits[0].author.name }}<br>E-Mail: ${{ github.event.commits[0].author.email }}<br>Commit Message: ${{ github.event.commits[0].message }}<br>Commit ID: <a href="${{ github.event.commits[0].url }}">${{ github.event.commits[0].id }}</a><br></p>' | |
| # recipients' addresses split by comma | |
| to: [email protected] | |
| from: GitHub Zotero CI |