GOCAM export to SIF

This is a simple tool in NodeJS to convert GO-CAMs from their TTL format to the SIF format. Two SIF archives are currently generated.

Two SIF Archives

SIF Gene Product - Gene Product Causal Relationships

In this format, the SIF simplifies the GO-CAMs to only highlight the relationships between Gene Products. As a consequence, GO-CAMs having only 1 Gene Product won't have a SIF as it would consist of a single node.

SIF GO-CAMs

In this format, the SIF is extended to represent the actual relationships present in the original GO-CAM model.

Install & Usage

1. Check nodejs is installed, if not, go to NodeJS
2. Clone this repository and run npm install
3. Then run node ttl2sif.js <gocam:ttl:folder> <sif:output:folder> <sif:output:zip>

Note:

• should be run on the TTL folder containing production GO-CAMs
• extracting the production GO-CAMs can be done using the following shell command: