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Working Snap Created and Published #427

Working Snap Created and Published

Working Snap Created and Published #427

Workflow file for this run

name: metapackage-tests
on:
push:
paths:
- 'src/*meta*.f90' # On push, only launch job if something has changed in the metapackages
- 'src/fpm/*meta*.f90'
- 'src/fpm/manifest/*meta*.f90'
- 'src/ci/meta_tests.sh'
- 'src/.github/workflows/meta.yml'
pull_request:
release:
types: [published]
env:
CI: "ON" # We can detect this in the build system and other vendors implement it
HOMEBREW_NO_ANALYTICS: 1 # Make Homebrew installation a little quicker
HOMEBREW_NO_AUTO_UPDATE: 1
HOMEBREW_NO_BOTTLE_SOURCE_FALLBACK: 1
HOMEBREW_NO_GITHUB_API: 1
HOMEBREW_NO_INSTALL_CLEANUP: 1
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: 1
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
include:
- os: ubuntu-latest
mpi: intel
- os: ubuntu-latest
mpi: openmpi
- os: ubuntu-latest
mpi: mpich
- os: macos-12
mpi: openmpi
- os: macos-12
mpi: mpich
steps:
- name: Checkout code
uses: actions/checkout@v4
- name: (Ubuntu) setup gcc version
if: contains(matrix.os,'ubuntu')
run: |
echo "GCC_V=10" >> $GITHUB_ENV
- name: (macOS) setup gcc version
if: contains(matrix.os,'macos')
run: |
echo "GCC_V=13" >> $GITHUB_ENV
- name: (Windows) Install MSYS2
uses: msys2/setup-msys2@v2
if: contains(matrix.os,'windows') && contains(matrix.mpi,'msmpi')
with:
msystem: MINGW64
update: true
install: >-
git
base-devel
wget
unzip
curl
hdf5
- name: (Windows) Setup VS Build environment
if: contains(matrix.os,'windows') && contains(matrix.mpi,'intel')
uses: seanmiddleditch/gha-setup-vsdevenv@master
- name: (Windows) Retrieve Intel toolchain
if: contains(matrix.os,'windows') && contains(matrix.mpi,'intel')
shell: pwsh
working-directory: C:\TEMP
run: |
curl.exe --output webimage.exe --url https://registrationcenter-download.intel.com/akdlm/irc_nas/19085/w_HPCKit_p_2023.0.0.25931_offline.exe --retry 5 --retry-delay 5
Start-Process -FilePath "webimage.exe" -ArgumentList "-s -x -f oneAPI --log extract.log" -Wait
Remove-Item "webimage.exe" -Force
Start-Process -FilePath "oneAPI\bootstrapper.exe" -ArgumentList "-s --action install --eula=accept --components=""intel.oneapi.win.cpp-compiler:intel.oneapi.win.ifort-compiler:intel.oneapi.win.mpi.devel"" -p=NEED_VS2017_INTEGRATION=0 -p=NEED_VS2019_INTEGRATION=0 -p=NEED_VS2022_INTEGRATION=0 --log-dir=." -Wait
Remove-Item "oneAPI" -Force -Recurse
- name: (Ubuntu) Install gfortran
if: contains(matrix.os,'ubuntu')
run: |
sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-${GCC_V} 100 \
--slave /usr/bin/gfortran gfortran /usr/bin/gfortran-${GCC_V} \
--slave /usr/bin/gcov gcov /usr/bin/gcov-${GCC_V}
- name: (Ubuntu) Install OpenMPI
if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'openmpi')
run: |
sudo apt-get update
sudo apt install -y -q openmpi-bin libopenmpi-dev hwloc fabric libhdf5-dev libhdf5-fortran-102
- name: (Ubuntu) Install MPICH
if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'mpich')
run: |
sudo apt-get update
sudo apt install -y -q mpich hwloc fabric libhdf5-dev libhdf5-fortran-102
- name: (Ubuntu) Retrieve Intel toolchain
if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'intel')
timeout-minutes: 1
run: |
wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null
echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
sudo apt-get update
- name: (Ubuntu) Install Intel oneAPI
if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'intel')
uses: fortran-lang/[email protected]
id: setup-fortran
with:
compiler: intel
version: 2024.1.0
- name: (Ubuntu) finalize oneAPI environment
if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'intel')
run: |
# Install MPI
sudo apt-get install -y -q intel-oneapi-mpi-devel ninja-build cmake
source /opt/intel/oneapi/setvars.sh --force
printenv >> $GITHUB_ENV
# To run HDF5 with oneAPI, we need to build it from source. Use CMake to generate pkg-config info
curl -O -L https://github.com/HDFGroup/hdf5/archive/refs/tags/snapshot-1.14.tar.gz
tar zxf snapshot-1.14.tar.gz
cd hdf5-snapshot-1.14
cmake -B build -DCMAKE_Fortran_COMPILER=ifx -DCMAKE_C_COMPILER=icx -DCMAKE_CXX_COMPILER=icpx -DHDF5_BUILD_FORTRAN=ON -DCMAKE_INSTALL_PREFIX=/usr
cd build
make -j
sudo make install
- name: (Windows) Put MSYS2_MinGW64 on PATH
if: contains(matrix.os,'windows') && (!contains(matrix.mpi,'intel'))
# there is not yet an environment variable for this path from msys2/setup-msys2
run: echo "${{ runner.temp }}/msys64/mingw64/bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append
- name: (Windows) download MS-MPI setup (SDK is from MSYS2)
if: contains(matrix.os,'windows') && contains(matrix.mpi,'msmpi')
# run: curl -L -O https://github.com/microsoft/Microsoft-MPI/releases/download/v10.1.2/msmpisetup.exe 10.1.1
run: curl -L -O https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623/msmpisetup.exe # 10.1.2
- name: (Windows) Install mpiexec.exe (-force needed to bypass GUI on headless)
if: contains(matrix.os,'windows') && contains(matrix.mpi,'msmpi')
run: .\msmpisetup.exe -unattend -force
- name: (Windows) test that mpiexec.exe exists
if: contains(matrix.os,'windows') && contains(matrix.mpi,'msmpi')
# can't use MSMPI_BIN as Actions doesn't update PATH from msmpisetup.exe
run: Test-Path "C:\Program Files\Microsoft MPI\Bin\mpiexec.exe" -PathType leaf
- name: (Windows) test that OneAPI is installed
if: contains(matrix.os,'windows') && contains(matrix.mpi,'intel')
run: |
Test-Path -Path "C:\Program Files (x86)\Intel\oneAPI\setvars.bat" -PathType leaf
Test-Path -Path "C:\Program Files (x86)\Intel\oneAPI\compiler\latest\env\vars.bat" -PathType leaf
- name: (Windows) put MSMPI_BIN on PATH (where mpiexec is)
if: contains(matrix.os,'windows') && contains(matrix.mpi,'msmpi')
run: |
echo "C:\Program Files\Microsoft MPI\Bin\" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append
echo "/c/Program Files/Microsoft MPI/Bin/" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append
echo "MSMPI_BIN=C:\Program Files\Microsoft MPI\Bin\" | Out-File -FilePath $env:GITHUB_ENV -Append
- name: (Windows) load OneAPI environment variables
if: contains(matrix.os,'windows') && contains(matrix.mpi,'intel')
shell: cmd
run: |
"C:\Program Files (x86)\Intel\oneAPI\setvars.bat"
"C:\Program Files (x86)\Intel\oneAPI\compiler\latest\env\vars.bat"
- name: (Windows) Install MSYS2 msmpi package
if: contains(matrix.os,'windows') && contains(matrix.mpi,'msmpi')
shell: msys2 {0}
run: pacman --noconfirm -S mingw-w64-x86_64-msmpi
- name: (macOS) Set up Homebrew
if: contains(matrix.os,'macos')
id: set-up-homebrew
uses: Homebrew/actions/setup-homebrew@master
- name: (macOS) Install Homebrew gfortran
if: contains(matrix.os, 'macos')
run: |
# Only install gcc if not already available
which gfortran-${{ env.GCC_V }} || brew install gcc@${{ env.GCC_V }}
which gfortran-${{ env.GCC_V }}
which gfortran || ln -s /usr/local/bin/gfortran-${{ env.GCC_V }} /usr/local/bin/gfortran
# Backport gfortran shared libraries to version 10 folder. This is necessary because all macOS releases of fpm
# have these paths hardcoded in the executable (no PIC?). Current bootstrap version 0.8.0 has gcc-10
mkdir /usr/local/opt/gcc@10
mkdir /usr/local/opt/gcc@10/lib
mkdir /usr/local/opt/gcc@10/lib/gcc
mkdir /usr/local/opt/gcc@10/lib/gcc/10
mkdir /usr/local/lib/gcc/10
ln -fs /usr/local/opt/gcc@${{ env.GCC_V }}/lib/gcc/${{ env.GCC_V }}/libquadmath.0.dylib /usr/local/opt/gcc@10/lib/gcc/10/libquadmath.0.dylib
ln -fs /usr/local/opt/gcc@${{ env.GCC_V }}/lib/gcc/${{ env.GCC_V }}/libgfortran.5.dylib /usr/local/opt/gcc@10/lib/gcc/10/libgfortran.5.dylib
# Newer gcc versions use libgcc_s.1.1.dylib
ln -fs /usr/local/lib/gcc/${{ env.GCC_V }}/libgcc_s.1.dylib /usr/local/lib/gcc/10/libgcc_s.1.dylib || ln -fs /usr/local/lib/gcc/${{ env.GCC_V }}/libgcc_s.1.1.dylib /usr/local/lib/gcc/10/libgcc_s.1.dylib
- name: (macOS) Install homebrew MPICH
if: contains(matrix.mpi,'mpich') && contains(matrix.os,'macos')
run: |
brew install mpich
- name: (macOS) Install homebrew OpenMPI
if: contains(matrix.mpi,'openmpi') && contains(matrix.os,'macos')
run: |
brew install openmpi #--cc=gcc-${{ env.GCC_V }} openmpi
- name: (macOS) Install homebrew HDF5
if: contains(matrix.os,'macos')
run: |
brew install hdf5
# Phase 1: Bootstrap fpm with existing version
- name: Install fpm
uses: fortran-lang/setup-fpm@v5
with:
fpm-version: 'v0.8.0'
- name: Remove fpm from path
shell: bash
run: |
mv $(which fpm) fpm-bootstrap${{ matrix.exe }}
echo "BOOTSTRAP=$PWD/fpm-bootstrap" >> $GITHUB_ENV
- name: (macOS/Ubuntu) Use gcc/g++ instead of Clang for C/C++ / ifx to build fpm
if: contains(matrix.os,'macOS') || contains(matrix.os,'ubuntu')
shell: bash
run: |
echo "FPM_FC=gfortran-${{ env.GCC_V }}" >> $GITHUB_ENV
echo "FPM_CC=gcc-${{ env.GCC_V }}" >> $GITHUB_ENV
echo "FPM_CXX=g++-${{ env.GCC_V }}" >> $GITHUB_ENV
- name: Build Fortran fpm (bootstrap)
shell: bash
run: |
${{ env.BOOTSTRAP }} build
- name: Run Fortran fpm (bootstrap)
shell: bash
run: |
${{ env.BOOTSTRAP }} run
${{ env.BOOTSTRAP }} run -- --version
${{ env.BOOTSTRAP }} run -- --help
- name: Test Fortran fpm (bootstrap)
if: (!contains(matrix.mpi,'intel'))
shell: bash
run: |
${{ env.BOOTSTRAP }} test
- name: Install Fortran fpm (bootstrap)
shell: bash
run: |
${{ env.BOOTSTRAP }} install
# Phase 2: Bootstrap fpm with itself
- name: Replace bootstrapping version
shell: bash
run: |
${{ env.BOOTSTRAP }} run --runner cp -- fpm-debug${{ matrix.exe }}
rm -v ${{ env.BOOTSTRAP }}
echo "FPM=$PWD/fpm-debug" >> $GITHUB_ENV
- name: Get version (normal)
if: github.event_name != 'release'
shell: bash
run: |
VERSION=$(git rev-parse --short HEAD)
echo "VERSION=$VERSION" >> $GITHUB_ENV
- name: Get version (release)
if: github.event_name == 'release'
shell: bash
run: |
VERSION=$(echo ${{ github.ref }} | cut -dv -f2)
echo "VERSION=$VERSION" >> $GITHUB_ENV
FPM_VERSION=$(${{ env.FPM }} --version | grep -o '${{ env.REGEX }}')
[ "$VERSION" = "$FPM_VERSION" ]
env:
REGEX: '[0-9]\{1,4\}\.[0-9]\{1,4\}\.[0-9]\{1,4\}'
- name: Build Fortran fpm
shell: bash
run: |
${{ env.FPM }} build ${{ matrix.release-flags }}
- name: Run Fortran fpm
shell: bash
run: |
${{ env.FPM }} run ${{ matrix.release-flags }}
${{ env.FPM }} run ${{ matrix.release-flags }} -- --version
${{ env.FPM }} run ${{ matrix.release-flags }} -- --help
- name: Install Fortran fpm
shell: bash
run: |
${{ env.FPM }} install ${{ matrix.release-flags }}
- name: Package release version
shell: bash
run: |
${{ env.FPM }} run ${{ matrix.release-flags }} --runner cp -- ${{ env.EXE }}
rm -v ${{ env.FPM }}
echo "FPM_RELEASE=${{ env.EXE }}" >> $GITHUB_ENV
env:
EXE: fpm-${{ env.VERSION }}-${{ matrix.os-arch }}${{ matrix.exe }}
- name: Use Intel compiler for the metapackage tests
if: contains(matrix.mpi,'intel')
shell: bash
run: |
echo "FPM_FC=ifx" >> $GITHUB_ENV
echo "FPM_CC=icx" >> $GITHUB_ENV
echo "FPM_CXX=icpx" >> $GITHUB_ENV
- name: Run metapackage tests using the release version
shell: bash
run: |
ci/meta_tests.sh "$PWD/${{ env.FPM_RELEASE }}"