DO NOT SQUASH Add PyOP2 to Firedrake repository #14
Workflow file for this run
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| name: PyOP2 | |
| # Trigger the workflow on push or pull request, | |
| # but only for the master branch | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| # Don't immediately kill all if one Python version fails | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12', '3.13'] | |
| env: | |
| CC: mpicc | |
| PETSC_DIR: ${{ github.workspace }}/petsc | |
| PETSC_ARCH: default | |
| PETSC_CONFIGURE_OPTIONS: --with-debugging=1 --with-shared-libraries=1 --with-c2html=0 --with-fortran-bindings=0 | |
| RDMAV_FORK_SAFE: 1 | |
| PYOP2_CI_TESTS: 1 | |
| timeout-minutes: 60 | |
| steps: | |
| - name: Install system dependencies | |
| shell: bash | |
| run: | | |
| sudo apt update | |
| sudo apt install build-essential mpich libmpich-dev \ | |
| libblas-dev liblapack-dev gfortran libhdf5-mpich-dev | |
| - name: Set correct Python version | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Clone PETSc | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: firedrakeproject/petsc | |
| path: ${{ env.PETSC_DIR }} | |
| - name: Build and install PETSc | |
| shell: bash | |
| working-directory: ${{ env.PETSC_DIR }} | |
| run: | | |
| ./configure "$PETSC_CONFIGURE_OPTIONS" | |
| make | |
| - name: Build and install petsc4py | |
| shell: bash | |
| working-directory: ${{ env.PETSC_DIR }}/src/binding/petsc4py | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade wheel cython numpy | |
| python -m pip install --no-deps . | |
| - name: Checkout PyOP2 | |
| uses: actions/checkout@v4 | |
| with: | |
| path: PyOP2 | |
| - name: Install PyOP2 dependencies | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: | | |
| python -m pip install -U flake8 | |
| python -m pip install -U pytest-timeout | |
| python -m pip install -U setuptools | |
| python -m pip install --no-binary h5py h5py | |
| - name: Install PyOP2 | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: python -m pip install . | |
| - name: Run linting | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: make lint | |
| - name: Run tests | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: | | |
| # Running parallel test cases separately works around a bug in pytest-mpi | |
| pytest -k "not parallel" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/pyop2 | |
| mpiexec -n 3 pytest -k "parallel[3]" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/pyop2 | |
| timeout-minutes: 10 |