Misc cleanup #117
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| name: Test suite | |
| on: | |
| # Trigger the CI whenever a commit is pushed to main or develop, i.e., a PR is merged | |
| push: | |
| branches: [main, develop] | |
| # Trigger the CI whenever a commit is pushed to an open PR | |
| pull_request: | |
| env: | |
| # Environment variables for GISS modelE | |
| GISS_HOME: /__w/GISS-GC/GISS-GC | |
| ModelE_Support: /__w/GISS-GC/GISS-GC/run | |
| DATA: /__w/GISS-GC/GISS-GC/run/prod_input_files | |
| # Environment variables for compiler | |
| CC: gcc | |
| CXX: g++ | |
| FC: gfortran | |
| F90: gfortran | |
| F77: gfortran | |
| # Misc. environment variables | |
| F_UFMTENDIAN: big | |
| KMP_STACKSIZE: 100000000 | |
| OMP_NUM_THREADS: 1 | |
| jobs: | |
| # Test that GISS-GC can be compiled without error | |
| compile: | |
| runs-on: ubuntu-22.04 | |
| container: | |
| image: ghcr.io/fetch4/giss-gc-dev-env:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.github_token }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup submodules | |
| run: | | |
| git config --global --add safe.directory ${GISS_HOME} | |
| git submodule init | |
| git submodule update | |
| - name: Build tools | |
| run: | | |
| . /opt/spack-environment/activate.sh | |
| cd ${GISS_HOME}/model/mk_diags | |
| /bin/bash compscr | |
| - name: Create fake inputs | |
| run: | | |
| # Make run directories | |
| mkdir -p ${DATA} | |
| mkdir -p ${ModelE_Support}/exec | |
| mkdir -p ${ModelE_Support}/huge_space | |
| mkdir -p ${ModelE_Support}/prod_decks | |
| mkdir -p ${ModelE_Support}/prod_runs | |
| # Fake input files | |
| touch ${DATA}/CD144X90.ext.nc | |
| touch ${DATA}/cloud.epsilon4.72x46 | |
| touch ${DATA}/CO2profile.Jul16-2017.txt | |
| touch ${DATA}/CROPS_and_pastures_Pongratz_to_Hurtt_144X90N_nocasp.nc | |
| touch ${DATA}/dH2O_by_CH4_monthly | |
| touch ${DATA}/GHG.CMIP6.1-2014.txt | |
| touch ${DATA}/GIC.144X90.DEC01.1.ext_1.nc | |
| touch ${DATA}/GLMELT_144X90_gas.OCN.nc | |
| touch ${DATA}/H2Ocont_MT_CKD | |
| touch ${DATA}/Irrig144x90_1848to2100_FixedFuture_v3.nc | |
| touch ${DATA}/ISCCP.tautables | |
| touch ${DATA}/LWCorrTables33k | |
| touch ${DATA}/LWTables33k_lowH2O_CO2_O3_planck_1-800 | |
| touch ${DATA}/miescatpar.abcdv2 | |
| touch ${DATA}/MSU_SSU_RSS_weights.txt | |
| touch ${DATA}/NCARIC.144x90.D7712010_ext.nc | |
| touch ${DATA}/o3_2010_shindell_144x90x49_April1850.nc | |
| touch ${DATA}/oct2003.relhum.nr.Q633G633.table | |
| touch ${DATA}/OST_144x90.1876-1885avg.CMIP6.nc | |
| touch ${DATA}/RD_Fd.nc | |
| touch ${DATA}/RD_Fd.names.txt | |
| touch ${DATA}/REG2X2.5 | |
| touch ${DATA}/S144X900098M.ext.nc | |
| touch ${DATA}/sgpgxg.table8 | |
| touch ${DATA}/SICE_144x90.1876-1885avg.CMIP6.nc | |
| touch ${DATA}/soil_textures_top30cm_2x2.5 | |
| touch ${DATA}/soilcarb_top30cm_2x2.5.nc | |
| touch ${DATA}/solar.CMIP6official.ann1850-2299_with_E3_fastJ.nc | |
| touch ${DATA}/STRATAER.VOL.1850-2014_CMIP6_hdr | |
| touch ${DATA}/top_index_144x90_a.ij.ext.nc | |
| touch ${DATA}/topcld.trscat8 | |
| touch ${DATA}/V144x90_EntMM16_height_trimmed_scaled_ext.nc | |
| touch ${DATA}/V144x90_EntMM16_lai_max_trimmed_scaled_ext.nc | |
| touch ${DATA}/V144x90_EntMM16_lai_trimmed_scaled_ext.nc | |
| touch ${DATA}/V144x90_EntMM16_lc_max_trimmed_scaled_nocrops.ext.nc | |
| touch ${DATA}/Z2HX2fromZ1QX1N.BS1.nc | |
| touch ${DATA}/ZSIfac_144x90.1876-1885avg.CMIP6.nc | |
| touch ${DATA}/ZVAR2X25A.nc | |
| mkdir -p ${DATA}/cmip6_nint_inputs_E14TomaOCNf10_4av_decadal/BCA | |
| mkdir -p ${DATA}/cmip6_nint_inputs_E14TomaOCNf10_4av_decadal/BCB | |
| mkdir -p ${DATA}/cmip6_nint_inputs_E14TomaOCNf10_4av_decadal/BCdalbsn | |
| mkdir -p ${DATA}/cmip6_nint_inputs_E14TomaOCNf10_4av_decadal/DUST | |
| mkdir -p ${DATA}/cmip6_nint_inputs_E14TomaOCNf10_4av_decadal/NIT | |
| mkdir -p ${DATA}/cmip6_nint_inputs_E14TomaOCNf10_4av_decadal/O3 | |
| mkdir -p ${DATA}/cmip6_nint_inputs_E14TomaOCNf10_4av_decadal/OCA | |
| mkdir -p ${DATA}/cmip6_nint_inputs_E14TomaOCNf10_4av_decadal/SSA | |
| mkdir -p ${DATA}/cmip6_nint_inputs_E14TomaOCNf10_4av_decadal/SUL | |
| mkdir -p ${DATA}/nudging/merra2 | |
| touch ${DATA}/nudging/merra2/uwnd.2014.MERRA2onGISSE2.nc4 | |
| touch ${DATA}/nudging/merra2/vwnd.2014.MERRA2onGISSE2.nc4 | |
| touch ${DATA}/nudging/merra2/uwnd.2015.MERRA2onGISSE2.nc4 | |
| touch ${DATA}/nudging/merra2/vwnd.2015.MERRA2onGISSE2.nc4 | |
| touch ${DATA}/nudging/merra2/uwnd.2016.MERRA2onGISSE2.nc4 | |
| touch ${DATA}/nudging/merra2/vwnd.2016.MERRA2onGISSE2.nc4 | |
| - name: Build GISS with GISS_ONLY rundeck | |
| run: | | |
| . /opt/spack-environment/activate.sh | |
| export RUNID=GISS_ONLY | |
| # Environment variables for passing NetCDF-C and NetCDF-Fortran | |
| export NETCDF_HOME=$(nc-config --prefix) | |
| export NETCDF_F_HOME=$(nf-config --prefix) | |
| # Environment variable for OpenMPI build | |
| MPIF90=$(find /opt/software -name mpif90 | head -n 1) | |
| export MPI_ROOT=${MPIF90%/bin/mpif90} | |
| # Copy over rundeck and modelErc | |
| cp .github/rundecks/${RUNID}.R decks | |
| cp .github/modelErc ~/.modelErc | |
| # Build the model | |
| cd ${GISS_HOME}/decks | |
| make clean | |
| make clean_all | |
| make -j setup RUN=${RUNID} F90=mpif90 GC=NO MECH=carbon | |
| - name: Build GISS-GC with GISS_GC_14 rundeck | |
| run: | | |
| . /opt/spack-environment/activate.sh | |
| export RUNID=GISS_GC_14 | |
| # Environment variables for passing NetCDF-C paths to GEOS-Chem | |
| export NETCDF_HOME=$(nc-config --prefix) | |
| export GC_BIN=${NETCDF_HOME}/bin | |
| export GC_INCLUDE=${NETCDF_HOME}/include | |
| export GC_LIB=${NETCDF_HOME}/lib | |
| # Environment variables for passing NetCDF-Fortran paths to GEOS-Chem | |
| export NETCDF_F_HOME=$(nf-config --prefix) | |
| export GC_F_BIN=${NETCDF_F_HOME}/bin | |
| export GC_F_INCLUDE=${NETCDF_F_HOME}/include | |
| export GC_F_LIB=${NETCDF_F_HOME}/lib | |
| # Environment variable for OpenMPI build | |
| MPIF90=$(find /opt/software -name mpif90 | head -n 1) | |
| export MPI_ROOT=${MPIF90%/bin/mpif90} | |
| # Copy over rundeck and modelErc | |
| cp .github/rundecks/${RUNID}.R decks | |
| cp .github/modelErc ~/.modelErc | |
| # Build the model | |
| cd ${GISS_HOME}/decks | |
| make clean | |
| make clean_all | |
| make -j setup RUN=${RUNID} F90=mpif90 GC=YES MECH=carbon |