v0.3.0

Changed

• Updated Dorado to v0.2.1
• --basecaller_cfg and --remora_cfg are now validated against a list of models installed in the Dorado container

Fixed

• Workflow no longer prints a confusing error when Dorado fails

v0.2.0

Added

• --basecaller_args may be used to provide custom arguments to the basecalling process

Changed

• Updated Dorado to v0.1.1
  • Latest models are now v4.0.0
• Workflow prints a more helpful error when Dorado fails due to unknown model name

v0.1.2

Changed

• Updated description in manifest

v0.1.1

Fixed

• Default basecaller_basemod_threads value
• Undefined colors variable

v0.1.0

Added

• Workflow will now output pass and fail CRAM
  • Reads are separated into pass and fail based on their mean qscore as calculated by dorado
  • The threshold can be changed with --qscore_filter

Changed

• Improved --help documentation

Fixed

• Workflow will exit with "No files match pattern" if no suitable files are found to basecall
  • Ensure to set --dorado_ext to fast5 or pod5 as appropriate

v0.0.1

• Initial release of wf-basecalling supporting the Dorado basecaller