v1.1.9

Fixed

• Report crashing when no data are present in the input pod5.
• Reconciled workflow with wf-template v5.1.3.
• Updated Dorado to v0.7.0 (see https://github.com/nanoporetech/dorado/releases/tag/v0.7.0)
• Added new DNA and RNA 5.0.0 models.

v1.1.7

Fixed

• Workflow accepting incompatible --fastq_only and --duplex options
• Dynamically updated report in --watch_path mode.

v1.1.6

Fixed

• qscore_filter inadvertently disabled in v1.1.5

v1.1.5

Changed

• Minor update to default resource requests on dorado task.

Added

• Experimental feature switch.

v1.1.4

Changed

• Updated Dorado to v0.5.2 (see https://github.com/nanoporetech/dorado/releases/tag/v0.5.2)

v1.1.3

Changed

• Bumped memory directives for intense tasks to reduce likelihood of job failure
• Default to parallel GPU usage when using awsbatch profile

Removed

• Runtime driver check in Dorado process, as this is no longer available in the Dorado image

v1.1.2

Changed

• Updated dorado version to v0.5.1 (see https://github.com/nanoporetech/dorado/releases/tag/v0.5.1)

v1.1.1

Added

• Reintroduced RNA002 models

v1.1.0

[Added]

• --duplex basecalling converts FAST5 to POD5 automatically
  • Converted POD5 files are deleted by default, use --output_pod5 to output converted POD5 files to the workflow output directory.

Changed

• Updated Dorado to v0.3.4 (see https://github.com/nanoporetech/dorado/releases/tag/v0.3.4)

v1.0.1

Fixed

• Workflow crashes with fast5 input
• Workflow fails early when trying to use FAST5 input with Dorado duplex