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v0.4.0

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@epi2melabs-bot epi2melabs-bot released this 22 Feb 11:25
· 169 commits to master since this release

Changed

  • Reference is no longer required for basecalling
    • CRAM files with no alignments will be generated if --ref is not provided
    • FASTQ may be output instead of CRAM by providing --fastq_only
  • PG line for converting Dorado SAM output to uBAM is no longer written to output header
  • Work directory is automatically cleaned up on successful completion to remove large intermediate files
    • Override this by including cleanup = false in a custom Nextflow configuration file
  • Number of threads for merging is now configurable for advanced users