sync with develop (20241219) + version bump to `5.0.0beta1` #22052

boegel · 2024-12-18T13:22:04Z

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This reverts commit 63fbf75.

…new_pr_PySCF270 {chem}[foss/2023a] PySCF v2.7.0, NECI v20230620, tblis v20230422

…asyconfigs into 20241112092506_new_pr_pyWannier9020240128

…new_pr_UCC-CUDA120 {lib}[GCCcore/13.2.0] UCC-CUDA v1.2.0 w/ CUDA 12.4.0

…asyconfigs into 20241128162722_new_pr_OSU-Micro-Benchmarks75

…new_pr_MATES01520241121 {bio}[foss/2023b] MATES v0.1.5-20241121, anndata v0.11.1, pybedtools v0.10.0, ...

…pr_HeFFTe241 {lib}[foss/2023b] HeFFTe v2.4.1

…new_pr_Spectre021 {bio}[foss/2023a] Spectre v0.2.1

…_new_pr_CellRanger900 {bio}[system/system] CellRanger v9.0.0

…_pr_OSU-Micro-Benchmarks75 {perf}[gompi/2023b] OSU-Micro-Benchmarks v7.5 w/ CUDA 12.4.0

…_new_pr_ABRicate100 {bio}[gompi/2023b] ABRicate v1.0.0, BLAST+ v2.16.0, BWA v0.7.18, ... w/ _saute.1.3.0_2

…new_pr_MitoFinder142 {bio}[GCCcore/12.3.0,foss/2023a] MitoFinder v1.4.2, IDBA-UD v1.1.3 w/ Python 2.7.18

…_pr_libheif1120 add Doxygen build dep to libheif, and drop libheif and libde265 to GCCcore

…new_pr_IGV2191 {bio}[system/system] IGV v2.19.1 w/ Java 17

…_pr_GPAW-setups24110 {chem}[system/system] GPAW-setups v24.11.0

…109_new_pr_Anaconda32024061 {lang}[system/system] Anaconda3 v2024.06-1

…08_new_pr_Gurobi1200 {math}[GCCcore/13.2.0] Gurobi v12.0.0

…g unresolved templates error

…pr_Whisper20240930 {ai}[foss/2023a] Whisper v20240930 w/ CUDA 12.1.1

…asyconfigs into 5.0.x

…1.eb

lexming

LGTM

lexming · 2024-12-19T14:13:41Z

Merging, thanks @boegel !

Flamefire · 2024-12-19T14:46:36Z

@boegel I got some more of those template-resolve-issues fixed in #22061
I just fixed the conflicts as you found some of those too.

pavelToman and others added 30 commits November 28, 2024 14:50

Update MATES-0.1.5-20241121-foss-2023b.eb - add samtools dep

77487c1

Update MATES-0.1.5-20241121-foss-2023b.eb - typo

7345fe3

adding easyconfigs: Tombo-1.5.1-foss-2023a.eb

8a8983a

adding easyconfigs: OSU-Micro-Benchmarks-7.5-gompi-2023b-CUDA-12.4.0.eb

3ac794d

Graphviz-12.2.0-GCCcore-13.3.0.eb

dac0227

adding easyconfigs: pyproj-3.7.0-GCCcore-13.3.0.eb

73b498d

adding easyconfigs: CellRanger-9.0.0.eb

33294cd

Revert "fix Score-P configure when install paths contains 'yes/no'"

db3d176

This reverts commit 63fbf75.

nccl was renamed to xccl

de79ec7

WPS 4.6.0 WRF 4.6.1

1254d24

Merge pull request easybuilders#21616 from PetrKralCZ/20241010154911_…

331a9b0

…new_pr_PySCF270 {chem}[foss/2023a] PySCF v2.7.0, NECI v20230620, tblis v20230422

add line about CUDA support to description

ff6f291

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

6cd0048

…asyconfigs into 20241112092506_new_pr_pyWannier9020240128

added JasPer patch

420e7e8

Merge pull request easybuilders#21565 from tanmoy1989/20241007044945_…

d107aff

…new_pr_UCC-CUDA120 {lib}[GCCcore/13.2.0] UCC-CUDA v1.2.0 w/ CUDA 12.4.0

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

8e568cd

…asyconfigs into 20241128162722_new_pr_OSU-Micro-Benchmarks75

Merge pull request easybuilders#21919 from pavelToman/20241127164105_…

c81573c

…new_pr_MATES01520241121 {bio}[foss/2023b] MATES v0.1.5-20241121, anndata v0.11.1, pybedtools v0.10.0, ...

fix patch

c28eafd

Merge pull request easybuilders#21912 from boegel/20241126141326_new_…

58b09e4

…pr_HeFFTe241 {lib}[foss/2023b] HeFFTe v2.4.1

Fix missing dependencies in wxWidgets-3.2.6-GCC-13.2.0.eb

7be979a

Fix missing dependencies in GST-plugins-base-1.24.8-GCC-13.2.0.eb

eace94b

Fix Glib dependency

a1116f0

Fix Glib dependeny in Graphene-1.10.8-GCCcore-13.2.0.eb

a4ddc8a

Fix dependencies in GStreamer-1.24.8-GCC-13.2.0.eb

f4fc8ba

Merge pull request easybuilders#21881 from pavelToman/20241119121227_…

91bb8b3

…new_pr_Spectre021 {bio}[foss/2023a] Spectre v0.2.1

Merge pull request easybuilders#21934 from PhoenixEmik/20241129103427…

f431930

…_new_pr_CellRanger900 {bio}[system/system] CellRanger v9.0.0

Merge pull request easybuilders#21926 from bedroge/20241128162722_new…

f3bd10b

…_pr_OSU-Micro-Benchmarks75 {perf}[gompi/2023b] OSU-Micro-Benchmarks v7.5 w/ CUDA 12.4.0

Merge branch 'easybuilders:develop' into wrf-4.6.1

9e6cb5c

Fix dependencies in GStreamer-1.24.8-GCC-13.2.0.eb

c54bdfd

adding easyconfigs: Nextflow-24.10.2.eb

698bea5

Merge pull request easybuilders#22025 from akesandgren/20241213164029…

b502436

…_new_pr_ABRicate100 {bio}[gompi/2023b] ABRicate v1.0.0, BLAST+ v2.16.0, BWA v0.7.18, ... w/ _saute.1.3.0_2

branfosj closed this Dec 18, 2024

branfosj reopened this Dec 18, 2024

Merge pull request easybuilders#22017 from pavelToman/20241212145119_…

e406a5e

…new_pr_MitoFinder142 {bio}[GCCcore/12.3.0,foss/2023a] MitoFinder v1.4.2, IDBA-UD v1.1.3 w/ Python 2.7.18

Micket closed this Dec 18, 2024

Micket reopened this Dec 18, 2024

Micket and others added 14 commits December 18, 2024 19:38

Merge pull request easybuilders#22054 from jfgrimm/20241218134919_new…

4f2274b

…_pr_libheif1120 add Doxygen build dep to libheif, and drop libheif and libde265 to GCCcore

Merge pull request easybuilders#22043 from pavelToman/20241217152024_…

7f769c1

…new_pr_IGV2191 {bio}[system/system] IGV v2.19.1 w/ Java 17

Merge pull request easybuilders#21962 from schiotz/20241203143655_new…

d93d9ed

…_pr_GPAW-setups24110 {chem}[system/system] GPAW-setups v24.11.0

Merge pull request easybuilders#21643 from maxim-masterov/20241015003…

361db5b

…109_new_pr_Anaconda32024061 {lang}[system/system] Anaconda3 v2024.06-1

Update easybuild/easyconfigs/g/Gurobi/Gurobi-12.0.0-GCCcore-13.2.0.eb

892e94b

Merge pull request easybuilders#21985 from FokkeDijkstra/202412061306…

45813a2

…08_new_pr_Gurobi1200 {math}[GCCcore/13.2.0] Gurobi v12.0.0

use 'maxparallel' instead of 'parallel'

68e2d5d

use get_ref in more places in easyconfigs test suite, to avoid hittin…

009af9a

…g unresolved templates error

Merge pull request easybuilders#22031 from boegel/20241215173242_new_…

c31c9c7

…pr_Whisper20240930 {ai}[foss/2023a] Whisper v20240930 w/ CUDA 12.1.1

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

8b6f41c

…asyconfigs into 5.0.x

fix codestyle in Anaconda3-2024.06-1.eb

d617bac

fix codestyle in GPAW-setups-24.11.0.eb

e5e0729

fix codestyle in Gurobi-12.0.0-GCCcore-13.2.0.eb

d6f621b

fix codestyle in VCFtools-0.1.16-GCC-13.2.0.eb

9d8c8b0

lexming changed the title ~~sync with develop (20241218) + version bump to 5.0.0beta1~~ sync with develop (20241219) + version bump to 5.0.0beta1 Dec 19, 2024

lexming added 5 commits December 19, 2024 14:08

remove default parameters from Gurobi-12.0.0-GCCcore-13.2.0.eb

4180ead

remove default parameters from Whisper-20240930-foss-2023a-CUDA-12.1.…

f873919

…1.eb

remove default parameters from LERC-4.0.0-GCCcore-13.3.0.eb

c4f0c1e

add missing checksum to Safetensors-0.4.4-gfbf-2023b.eb

94caba2

remove default parameters from Arrow-17.0.0-gfbf-2024a.eb

e11d500

lexming approved these changes Dec 19, 2024

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lexming merged commit 8b4fd4f into easybuilders:5.0.x Dec 19, 2024
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sync with develop (20241219) + version bump to `5.0.0beta1` #22052

sync with develop (20241219) + version bump to `5.0.0beta1` #22052

boegel commented Dec 18, 2024

lexming left a comment

lexming commented Dec 19, 2024

Flamefire commented Dec 19, 2024

sync with develop (20241219) + version bump to 5.0.0beta1 #22052

sync with develop (20241219) + version bump to 5.0.0beta1 #22052

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lexming commented Dec 19, 2024

Flamefire commented Dec 19, 2024

sync with develop (20241219) + version bump to `5.0.0beta1` #22052

sync with develop (20241219) + version bump to `5.0.0beta1` #22052