{astro,lib}[foss/2023b] EveryBeam v0.6.1, WSClean v3.5, DP3 v6.2 #21765

casparvl · 2024-10-29T22:00:52Z

(created using eb --new-pr)

Duplicates a patch from {lib}[foss/2023b] EveryBeam v0.5.2, v0.5.8, including patch to install python bindings and add metadata #21655 (whichever gets merged last will have to sync-with-develop)

Created this PR because Rapthor needs a newer WSClean, which then in turn needs a newer EveryBeam. Currently testing a rapthor pipeline to confirm that this combination works - then I'll mark this ready for review.

Edit: confirmed to work with Rapthor, so I'd like to get this reviewed and merged :) Note that this requires breaking the one-dep-per-toolchain policy. I'm reasonably sure that these tools are typically used in combination in such pipelines though. Plus: it's the only way to make that particular pipeline work in Rapthor - I believe we find that good enough reason. I'll add exceptions for these CI checks.

…023b.eb

github-actions · 2024-11-07T13:17:30Z

Updated software `DP3-6.2-foss-2023b.eb`

Diff against DP3-6.0-foss-2023b.eb

easybuild/easyconfigs/d/DP3/DP3-6.0-foss-2023b.eb

diff --git a/easybuild/easyconfigs/d/DP3/DP3-6.0-foss-2023b.eb b/easybuild/easyconfigs/d/DP3/DP3-6.2-foss-2023b.eb
index 8373cc5f8b..95c28fff22 100644
--- a/easybuild/easyconfigs/d/DP3/DP3-6.0-foss-2023b.eb
+++ b/easybuild/easyconfigs/d/DP3/DP3-6.2-foss-2023b.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'DP3'
-version = '6.0'
+version = '6.2'
 
 homepage = 'https://dp3.readthedocs.io/'
 description = "DP3: streaming processing pipeline for radio interferometric data."
@@ -22,11 +22,11 @@ sources = [
         }
     },
 ]
-patches = ['DP3-6.0_fix-for-xsimd-error-on-neoverse-v1.patch']
+patches = ['DP3-6.2_fix-for-xsimd-error-on-neoverse-v1.patch']
 checksums = [
     None,  # checksum for git clone source is non-deterministic
-    # DP3-6.0_fix-for-xsimd-error-on-neoverse-v1.patch
-    '7f5069388846c9c715013d5a3a267a6d8e266520445a6427e63e9d52d3046c9d',
+    # DP3-6.2_fix-for-xsimd-error-on-neoverse-v1.patch
+    '51209661ee657151d94778916d4f295b9d767f6bbd13720fc5054a2a24f740dc',
 ]
 
 builddependencies = [
@@ -40,7 +40,7 @@ dependencies = [
     ('GSL', '2.7'),
     ('HDF5', '1.14.3'),
     ('Python', '3.11.5'),
-    ('EveryBeam', '0.5.2'),
+    ('EveryBeam', '0.6.1'),
     ('Armadillo', '12.8.0'),
     ('AOFlagger', '3.4.0'),
     ('IDG', '1.2.0'),

Diff against DP3-6.0-foss-2022a.eb

easybuild/easyconfigs/d/DP3/DP3-6.0-foss-2022a.eb

diff --git a/easybuild/easyconfigs/d/DP3/DP3-6.0-foss-2022a.eb b/easybuild/easyconfigs/d/DP3/DP3-6.2-foss-2023b.eb
index c18f4974ac..95c28fff22 100644
--- a/easybuild/easyconfigs/d/DP3/DP3-6.0-foss-2022a.eb
+++ b/easybuild/easyconfigs/d/DP3/DP3-6.2-foss-2023b.eb
@@ -1,51 +1,57 @@
 easyblock = 'CMakeMake'
 
 name = 'DP3'
-version = '6.0'
+version = '6.2'
+
 homepage = 'https://dp3.readthedocs.io/'
-description = """DP3: streaming processing pipeline for radio interferometric data."""
-
-toolchain = {'name': 'foss', 'version': '2022a'}
-
-sources = [{
-    'filename': '%(name)s-v%(version)s.tar.gz',
-    'git_config': {
-        'url': 'https://git.astron.nl/RD',
-        'repo_name': '%(name)s',
-        'tag': 'v%(version)s',
-        'clone_into': '%(name)s',
-        'recursive': True,
+description = "DP3: streaming processing pipeline for radio interferometric data."
+
+toolchain = {'name': 'foss', 'version': '2023b'}
+
+sources = [
+    {
+        'filename': '%(name)s-v%(version)s.tar.gz',
+        # Repo uses git submodules, which are not included in the release tarballs.
+        # Thus, we let EasyBuild download directly from the git repository.
+        'git_config': {
+            'url': 'https://git.astron.nl/RD',
+            'repo_name': '%(name)s',
+            'tag': 'v%(version)s',
+            'clone_into': '%(name)s',
+            'recursive': True
+        }
     },
-}]
-checksums = [None]
+]
+patches = ['DP3-6.2_fix-for-xsimd-error-on-neoverse-v1.patch']
+checksums = [
+    None,  # checksum for git clone source is non-deterministic
+    # DP3-6.2_fix-for-xsimd-error-on-neoverse-v1.patch
+    '51209661ee657151d94778916d4f295b9d767f6bbd13720fc5054a2a24f740dc',
+]
 
 builddependencies = [
-    ('CMake', '3.24.3'),
+    ('CMake', '3.27.6'),
 ]
-
 dependencies = [
     ('casacore', '3.5.0'),
-    ('Boost', '1.79.0'),
-    ('CFITSIO', '4.2.0'),
+    ('Boost', '1.83.0'),
+    ('CFITSIO', '4.3.1'),
     ('WCSLIB', '7.11'),
     ('GSL', '2.7'),
-    ('HDF5', '1.12.2'),
-    ('Python', '3.10.4'),
-    ('EveryBeam', '0.5.2'),
-    ('Armadillo', '11.4.3'),
-    ('AOFlagger', '3.4.0')
+    ('HDF5', '1.14.3'),
+    ('Python', '3.11.5'),
+    ('EveryBeam', '0.6.1'),
+    ('Armadillo', '12.8.0'),
+    ('AOFlagger', '3.4.0'),
+    ('IDG', '1.2.0'),
 ]
 
-# Without this, the wrong (system) python is picked up by cmake
-# in cases where the system python is newer than the one used in these EasyConfigs
-# See PR # 19119
-configopts = '-DPython3_EXECUTABLE=$EBROOTPYTHON/bin/python '
 
 sanity_check_paths = {
-    'files': ['include/include/dp3/base/DP3.h', 'bin/DP3'],
+    'files': ['include/include/%(namelower)s/base/%(name)s.h', 'bin/%(name)s'],
     'dirs': ['bin'],
 }
 
-sanity_check_commands = [('DP3', '--version')]
+sanity_check_commands = [('%(name)s', '--version')]
 
 moduleclass = 'astro'

Updated software `EveryBeam-0.6.1-foss-2023b.eb`

Diff against EveryBeam-0.5.2-foss-2023b.eb

easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.5.2-foss-2023b.eb

diff --git a/easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.5.2-foss-2023b.eb b/easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.6.1-foss-2023b.eb
index bec1bf004e..82e97f6e46 100644
--- a/easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.5.2-foss-2023b.eb
+++ b/easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.6.1-foss-2023b.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'EveryBeam'
-version = '0.5.2'
+version = "0.6.1"
 
 homepage = 'https://everybeam.readthedocs.io/'
 description = """Library that provides the antenna response pattern for several instruments,
@@ -23,7 +23,13 @@ sources = [
         }
     },
 ]
-checksums = [None]
+patches = [
+    'EveryBeam-0.5.4_python_metadata.patch'
+]
+checksums = [
+    None,  # checksum for git clone source is non-deterministic
+    '0f66d50b1f7944ad0d64898a0e54ee8b20dc9fb3ec0d15b4e1da30bda88688ab'  # EveryBeam-0.5.4_python_metadata.patch
+]
 
 builddependencies = [
     ('CMake', '3.27.6'),
@@ -40,10 +46,25 @@ dependencies = [
     ('libxml2', '2.11.5'),
 ]
 
+configopts = "-DBUILD_WITH_PYTHON=ON "
+
+# Note: we need to create a dir %(builddir)s/EveryBeam/everybeam for the pip install to complete succesfully
+postinstallcmds = [
+    "mkdir -p %(builddir)s/EveryBeam/everybeam && pip install %(builddir)s/EveryBeam --prefix=%(installdir)s"
+]
+
+modextravars = {'EVERYBEAM_DATADIR': '%(installdir)s/share/everybeam'}
+modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
 
 sanity_check_paths = {
     'files': ['include/%(name)s/beamformer.h', 'lib/libeverybeam.%s' % SHLIB_EXT],
     'dirs': [],
 }
 
+# Check if python support was build correctly, and can be found by pip
+sanity_check_commands = [
+    'python3 -c "import everybeam"',
+    'pip list | grep everybeam'
+]
+
 moduleclass = 'lib'

Diff against EveryBeam-0.5.2-foss-2022a.eb

easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.5.2-foss-2022a.eb

diff --git a/easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.5.2-foss-2022a.eb b/easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.6.1-foss-2023b.eb
index b61f0c8616..82e97f6e46 100644
--- a/easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.5.2-foss-2022a.eb
+++ b/easybuild/easyconfigs/e/EveryBeam/EveryBeam-0.6.1-foss-2023b.eb
@@ -1,49 +1,70 @@
 easyblock = 'CMakeMake'
 
 name = 'EveryBeam'
-version = '0.5.2'
+version = "0.6.1"
+
 homepage = 'https://everybeam.readthedocs.io/'
 description = """Library that provides the antenna response pattern for several instruments,
 such as LOFAR (and LOBES), SKA (OSKAR), MWA, JVLA, etc."""
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
-sources = [{
-    'filename': '%(name)s-v%(version)s.tar.gz',
-    'git_config': {
-        'url': 'https://git.astron.nl/RD',
-        'repo_name': '%(name)s',
-        'tag': 'v%(version)s',
-        'clone_into': '%(name)s',
-        'recursive': True,
+sources = [
+    {
+        'filename': '%(name)s-v%(version)s.tar.gz',
+        # Repo uses git submodules, which are not included in the release tarballs.
+        # Thus, we let EasyBuild download directly from the git repository.
+        'git_config': {
+            'url': 'https://git.astron.nl/RD',
+            'repo_name': '%(name)s',
+            'tag': 'v%(version)s',
+            'clone_into': '%(name)s',
+            'recursive': True
+        }
     },
-}]
-checksums = [None]
+]
+patches = [
+    'EveryBeam-0.5.4_python_metadata.patch'
+]
+checksums = [
+    None,  # checksum for git clone source is non-deterministic
+    '0f66d50b1f7944ad0d64898a0e54ee8b20dc9fb3ec0d15b4e1da30bda88688ab'  # EveryBeam-0.5.4_python_metadata.patch
+]
 
 builddependencies = [
-    ('CMake', '3.24.3'),
-    ('wget', '1.21.3'),
+    ('CMake', '3.27.6'),
+    ('wget', '1.21.4'),
 ]
-
 dependencies = [
     ('casacore', '3.5.0'),
-    ('Boost', '1.79.0'),
-    ('CFITSIO', '4.2.0'),
+    ('Boost', '1.83.0'),
+    ('CFITSIO', '4.3.1'),
     ('WCSLIB', '7.11'),
     ('GSL', '2.7'),
-    ('HDF5', '1.12.2'),
-    ('Python', '3.10.4'),
-    ('libxml2', '2.9.13'),
+    ('HDF5', '1.14.3'),
+    ('Python', '3.11.5'),
+    ('libxml2', '2.11.5'),
 ]
 
-# Without this, the wrong (system) python is picked up by cmake
-# in cases where the system python is newer than the one used in these EasyConfigs
-# See PR # 19119
-configopts = '-DPython3_EXECUTABLE=$EBROOTPYTHON/bin/python '
+configopts = "-DBUILD_WITH_PYTHON=ON "
+
+# Note: we need to create a dir %(builddir)s/EveryBeam/everybeam for the pip install to complete succesfully
+postinstallcmds = [
+    "mkdir -p %(builddir)s/EveryBeam/everybeam && pip install %(builddir)s/EveryBeam --prefix=%(installdir)s"
+]
+
+modextravars = {'EVERYBEAM_DATADIR': '%(installdir)s/share/everybeam'}
+modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
 
 sanity_check_paths = {
-    'files': ['include/EveryBeam/beamformer.h', 'lib/libeverybeam.so'],
+    'files': ['include/%(name)s/beamformer.h', 'lib/libeverybeam.%s' % SHLIB_EXT],
     'dirs': [],
 }
 
+# Check if python support was build correctly, and can be found by pip
+sanity_check_commands = [
+    'python3 -c "import everybeam"',
+    'pip list | grep everybeam'
+]
+
 moduleclass = 'lib'

Updated software `WSClean-3.5-foss-2023b.eb`

Diff against WSClean-3.4-foss-2023b.eb

easybuild/easyconfigs/w/WSClean/WSClean-3.4-foss-2023b.eb

diff --git a/easybuild/easyconfigs/w/WSClean/WSClean-3.4-foss-2023b.eb b/easybuild/easyconfigs/w/WSClean/WSClean-3.5-foss-2023b.eb
index b1bdea0de2..0360535491 100644
--- a/easybuild/easyconfigs/w/WSClean/WSClean-3.4-foss-2023b.eb
+++ b/easybuild/easyconfigs/w/WSClean/WSClean-3.5-foss-2023b.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'WSClean'
-version = '3.4'
+version = "3.5"
 
 homepage = 'https://wsclean.readthedocs.io/'
 description = """WSClean (w-stacking clean) is a fast generic widefield imager.
@@ -10,21 +10,24 @@ multi-frequency deconvolution."""
 
 toolchain = {'name': 'foss', 'version': '2023b'}
 
+# Regular source tarballs don't include the git submodules. Check https://gitlab.com/aroffringa/wsclean/-/packages/
+# for the right path to a tarball that does contain it
 sources = [
     {
-        'source_urls': ['https://gitlab.com/aroffringa/%(namelower)s/-/package_files/97237455/'],
+        'source_urls': ['https://gitlab.com/aroffringa/%(namelower)s/-/package_files/140629243/'],
         'filename': '%(namelower)s-v%(version)s.tar.bz2',
         'download_filename': 'download'
     },
 ]
-checksums = ['b43d8ca490ccf34dd22aae6c5ca88a5dcb3cff0526835d3f97fa6d239745e641']
+checksums = ['ba1863945b6341398409d9fee0ab9ff202c4cb1216a102d0d91a92b45103ec95']
 
 builddependencies = [
     ('CMake', '3.27.6'),
 ]
+
 dependencies = [
     ('casacore', '3.5.0'),
-    ('EveryBeam', '0.5.2'),
+    ('EveryBeam', '0.6.1'),
     ('Boost', '1.83.0'),
     ('CFITSIO', '4.3.1'),
     ('GSL', '2.7'),

Diff against WSClean-3.4-foss-2022a.eb

easybuild/easyconfigs/w/WSClean/WSClean-3.4-foss-2022a.eb

diff --git a/easybuild/easyconfigs/w/WSClean/WSClean-3.4-foss-2022a.eb b/easybuild/easyconfigs/w/WSClean/WSClean-3.5-foss-2023b.eb
index e3bdcb0089..0360535491 100644
--- a/easybuild/easyconfigs/w/WSClean/WSClean-3.4-foss-2022a.eb
+++ b/easybuild/easyconfigs/w/WSClean/WSClean-3.5-foss-2023b.eb
@@ -1,46 +1,47 @@
 easyblock = 'CMakeMake'
 
 name = 'WSClean'
-version = '3.4'
+version = "3.5"
 
 homepage = 'https://wsclean.readthedocs.io/'
 description = """WSClean (w-stacking clean) is a fast generic widefield imager.
 It implements several gridding algorithms and offers fully-automated multi-scale
 multi-frequency deconvolution."""
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
-sources = [{
-    'source_urls': ['https://gitlab.com/aroffringa/wsclean/-/package_files/97237455/'],
-    'filename': '%(namelower)s-v%(version)s.tar.bz2',
-    'download_filename': 'download'  # endpoint for source tarball is not versioned
-}]
-checksums = ['b43d8ca490ccf34dd22aae6c5ca88a5dcb3cff0526835d3f97fa6d239745e641']
+# Regular source tarballs don't include the git submodules. Check https://gitlab.com/aroffringa/wsclean/-/packages/
+# for the right path to a tarball that does contain it
+sources = [
+    {
+        'source_urls': ['https://gitlab.com/aroffringa/%(namelower)s/-/package_files/140629243/'],
+        'filename': '%(namelower)s-v%(version)s.tar.bz2',
+        'download_filename': 'download'
+    },
+]
+checksums = ['ba1863945b6341398409d9fee0ab9ff202c4cb1216a102d0d91a92b45103ec95']
 
 builddependencies = [
-    ('CMake', '3.24.3'),
+    ('CMake', '3.27.6'),
 ]
 
 dependencies = [
     ('casacore', '3.5.0'),
-    ('EveryBeam', '0.5.2'),
-    ('Boost', '1.79.0'),
-    ('CFITSIO', '4.2.0'),
+    ('EveryBeam', '0.6.1'),
+    ('Boost', '1.83.0'),
+    ('CFITSIO', '4.3.1'),
     ('GSL', '2.7'),
-    ('HDF5', '1.12.2'),
-    ('Python', '3.10.4'),
+    ('HDF5', '1.14.3'),
+    ('Python', '3.11.5'),
+    ('IDG', '1.2.0'),
 ]
 
-# Without this, the wrong (system) python is picked up by cmake
-# in cases where the system python is newer than the one used in these EasyConfigs
-# See PR # 19119
-configopts = '-DPython3_EXECUTABLE=$EBROOTPYTHON/bin/python '
 
 sanity_check_paths = {
-    'files': ['include/wscleaninterface.h', 'bin/wsclean'],
+    'files': ['include/wscleaninterface.h', 'bin/%(namelower)s'],
     'dirs': ['bin'],
 }
 
-sanity_check_commands = [('wsclean', '--version')]
+sanity_check_commands = [('%(namelower)s', '--version')]
 
 moduleclass = 'astro'

casparvl · 2024-11-11T15:13:25Z

@boegelbot please test @ generoso

boegelbot · 2024-11-11T15:25:11Z

@casparvl: Request for testing this PR well received on login1

PR test command 'EB_PR=21765 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21765 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14687

Test results coming soon (I hope)...

- notification for comment with ID 2468410804 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-11T15:26:02Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 3 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/1073c9803bdd26b65fb0b1504958456a for a full test report.

casparvl · 2024-11-11T15:40:42Z

@boegelbot please test @ generoso

boegelbot · 2024-11-11T15:45:11Z

@casparvl: Request for testing this PR well received on login1

PR test command 'EB_PR=21765 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21765 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14688

Test results coming soon (I hope)...

- notification for comment with ID 2468471070 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

casparvl · 2024-11-11T15:49:11Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-11-11T15:50:09Z

@casparvl: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21765 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21765 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5250

Test results coming soon (I hope)...

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it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-11T15:56:48Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 3 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/a5146e9b2d00df8b0ae23ba46b9868db for a full test report.

boegelbot · 2024-11-11T15:57:38Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 3 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/61d59a291628d22716c8a00a0bac0548 for a full test report.

casparvl · 2024-11-11T16:25:01Z

Test report by @casparvl
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
tcn1.local.snellius.surf.nl - Linux RHEL 9.4, x86_64, AMD EPYC 7H12 64-Core Processor, Python 3.9.18
See https://gist.github.com/casparvl/234697d2cd9bffe5306ba59df8e39210 for a full test report.

casparvl · 2024-11-11T16:27:02Z

@boegelbot please test @ generoso

boegelbot · 2024-11-11T16:30:08Z

@casparvl: Request for testing this PR well received on login1

PR test command 'EB_PR=21765 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21765 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14690

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-11T16:50:33Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/819ad8ccb1905ecfb148a750adba3bf2 for a full test report.

casparvl · 2024-11-19T10:43:12Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-11-19T10:50:10Z

@casparvl: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21765 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21765 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5304

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
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boegelbot · 2024-11-19T11:02:37Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/a9aeaab6440d8d7f255d039d66d0175d for a full test report.

casparvl · 2024-11-20T14:25:38Z

@boegelbot please test @ generoso

boegelbot · 2024-11-20T14:30:05Z

@casparvl: Request for testing this PR well received on login1

PR test command 'EB_PR=21765 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21765 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14741

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-20T14:52:12Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/b50ca8aeba985082dd8560f8f1aa3e71 for a full test report.

adding easyconfigs: EveryBeam-0.6.1-foss-2023b.eb, WSClean-3.5-foss-2…

08ae511

…023b.eb

casparvl added the update label Oct 29, 2024

casparvl marked this pull request as draft October 29, 2024 22:02

casparvl changed the title ~~{astro,lib}[foss/2023b] EveryBeam v0.6.1, WSClean v3.5~~ {astro,lib}[foss/2023b] EveryBeam v0.6.1, WSClean v3.5, DP3 v6.2 Nov 4, 2024

casparl added 4 commits November 4, 2024 16:12

add DP3 as it also depends on EveryBeam

178870b

update patch

0054564

update patch checksum description

975cb97

Add EVERYBEAM_DATADIR environment variable

c3b3019

Add EVERYBEAM_DATADIR environment variable

88ba2ab

casparvl marked this pull request as ready for review November 11, 2024 15:13

Caspar van Leeuwen added 3 commits November 11, 2024 16:33

Make exception for 2nd EveryBeam dependency in 2023b

d7f9d7b

Add checksum for source

7f938fc

Add patch to this PR as well

c573ccd

Fixed checksum to correct version (3.5)

0c8f1dd

Fix CI issue

f8ecb4f

Forgot a comma

bf9fe67

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{astro,lib}[foss/2023b] EveryBeam v0.6.1, WSClean v3.5, DP3 v6.2 #21765

{astro,lib}[foss/2023b] EveryBeam v0.6.1, WSClean v3.5, DP3 v6.2 #21765

casparvl commented Oct 29, 2024 •

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boegelbot commented Nov 20, 2024

{astro,lib}[foss/2023b] EveryBeam v0.6.1, WSClean v3.5, DP3 v6.2 #21765

Are you sure you want to change the base?

{astro,lib}[foss/2023b] EveryBeam v0.6.1, WSClean v3.5, DP3 v6.2 #21765

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casparvl commented Oct 29, 2024 • edited Loading

github-actions bot commented Nov 7, 2024 • edited Loading

Updated software DP3-6.2-foss-2023b.eb

Updated software EveryBeam-0.6.1-foss-2023b.eb

Updated software WSClean-3.5-foss-2023b.eb

casparvl commented Nov 11, 2024 • edited Loading

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casparvl commented Oct 29, 2024 •

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github-actions bot commented Nov 7, 2024 •

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Updated software `DP3-6.2-foss-2023b.eb`

Updated software `EveryBeam-0.6.1-foss-2023b.eb`

Updated software `WSClean-3.5-foss-2023b.eb`

casparvl commented Nov 11, 2024 •

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