{data}[foss/2024a] Fiona v1.10.1 #21614

maxim-masterov · 2024-10-10T13:19:41Z

(created using eb --new-pr)

Depends on:

GDAL from {data}[foss/2024a] GDAL v3.10.0 #21907
Shapely from {math}[gfbf/2024a] Shapely v2.0.6 #21561

github-actions · 2024-12-06T10:41:42Z

Updated software `Fiona-1.10.1-foss-2024a.eb`

Diff against Fiona-1.9.5-foss-2023a.eb

easybuild/easyconfigs/f/Fiona/Fiona-1.9.5-foss-2023a.eb

diff --git a/easybuild/easyconfigs/f/Fiona/Fiona-1.9.5-foss-2023a.eb b/easybuild/easyconfigs/f/Fiona/Fiona-1.10.1-foss-2024a.eb
index 070bd33e7e..06bc9936c3 100644
--- a/easybuild/easyconfigs/f/Fiona/Fiona-1.9.5-foss-2023a.eb
+++ b/easybuild/easyconfigs/f/Fiona/Fiona-1.10.1-foss-2024a.eb
@@ -1,7 +1,7 @@
 easyblock = 'PythonBundle'
 
 name = 'Fiona'
-version = '1.9.5'
+version = '1.10.1'
 
 homepage = 'https://github.com/Toblerity/Fiona'
 description = """Fiona is designed to be simple and dependable. It focuses on reading and writing data
@@ -10,14 +10,19 @@ mappings, and iterators instead of classes specific to OGR. Fiona can read and w
 multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS
 packages such as pyproj, Rtree, and Shapely."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2024a'}
+
+builddependencies = [
+    ('Cython', '3.0.10'),
+]
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('GDAL', '3.7.1'),
-    ('Shapely', '2.0.1'),  # optional for 'calc' extras
+    ('Python', '3.12.3'),
+    ('GDAL', '3.10.0'),
+    ('Shapely', '2.0.6'),  # optional for 'calc' extras
 ]
 
+sanity_pip_check = True
 use_pip = True
 
 exts_list = [
@@ -30,19 +35,17 @@ exts_list = [
     ('munch', '4.0.0', {
         'checksums': ['542cb151461263216a4e37c3fd9afc425feeaf38aaa3025cd2a981fadb422235'],
     }),
-    ('fiona', version, {
+    ('%(namelower)s', version, {
         'use_pip_extras': 'calc',
-        'checksums': ['99e2604332caa7692855c2ae6ed91e1fffdf9b59449aa8032dd18e070e59a2f7'],
+        'checksums': ['b00ae357669460c6491caba29c2022ff0acfcbde86a95361ea8ff5cd14a86b68'],
     }),
 ]
 
-sanity_pip_check = True
-
 sanity_check_paths = {
     'files': ['bin/fio'],
     'dirs': ['lib/python%(pyshortver)s/site-packages'],
 }
 
-sanity_check_commands = ["fio --help"]
+sanity_check_commands = ['fio --help']
 
 moduleclass = 'data'

Diff against Fiona-1.9.2-foss-2022b.eb

easybuild/easyconfigs/f/Fiona/Fiona-1.9.2-foss-2022b.eb

diff --git a/easybuild/easyconfigs/f/Fiona/Fiona-1.9.2-foss-2022b.eb b/easybuild/easyconfigs/f/Fiona/Fiona-1.10.1-foss-2024a.eb
index 024b51efc9..06bc9936c3 100644
--- a/easybuild/easyconfigs/f/Fiona/Fiona-1.9.2-foss-2022b.eb
+++ b/easybuild/easyconfigs/f/Fiona/Fiona-1.10.1-foss-2024a.eb
@@ -1,7 +1,7 @@
 easyblock = 'PythonBundle'
 
 name = 'Fiona'
-version = '1.9.2'
+version = '1.10.1'
 
 homepage = 'https://github.com/Toblerity/Fiona'
 description = """Fiona is designed to be simple and dependable. It focuses on reading and writing data
@@ -10,14 +10,19 @@ mappings, and iterators instead of classes specific to OGR. Fiona can read and w
 multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS
 packages such as pyproj, Rtree, and Shapely."""
 
-toolchain = {'name': 'foss', 'version': '2022b'}
+toolchain = {'name': 'foss', 'version': '2024a'}
+
+builddependencies = [
+    ('Cython', '3.0.10'),
+]
 
 dependencies = [
-    ('Python', '3.10.8'),
-    ('GDAL', '3.6.2'),
-    ('Shapely', '2.0.1'),  # optional for 'calc' extras
+    ('Python', '3.12.3'),
+    ('GDAL', '3.10.0'),
+    ('Shapely', '2.0.6'),  # optional for 'calc' extras
 ]
 
+sanity_pip_check = True
 use_pip = True
 
 exts_list = [
@@ -27,22 +32,20 @@ exts_list = [
     ('click-plugins', '1.1.1', {
         'checksums': ['46ab999744a9d831159c3411bb0c79346d94a444df9a3a3742e9ed63645f264b'],
     }),
-    ('munch', '2.5.0', {
-        'checksums': ['2d735f6f24d4dba3417fa448cae40c6e896ec1fdab6cdb5e6510999758a4dbd2'],
+    ('munch', '4.0.0', {
+        'checksums': ['542cb151461263216a4e37c3fd9afc425feeaf38aaa3025cd2a981fadb422235'],
     }),
-    (name, version, {
+    ('%(namelower)s', version, {
         'use_pip_extras': 'calc',
-        'checksums': ['f9263c5f97206bf2eb2c010d52e8ffc54e96886b0e698badde25ff109b32952a'],
+        'checksums': ['b00ae357669460c6491caba29c2022ff0acfcbde86a95361ea8ff5cd14a86b68'],
     }),
 ]
 
-sanity_pip_check = True
-
 sanity_check_paths = {
     'files': ['bin/fio'],
     'dirs': ['lib/python%(pyshortver)s/site-packages'],
 }
 
-sanity_check_commands = ["fio --help"]
+sanity_check_commands = ['fio --help']
 
 moduleclass = 'data'

Diff against Fiona-1.8.21-foss-2022a.eb

easybuild/easyconfigs/f/Fiona/Fiona-1.8.21-foss-2022a.eb

diff --git a/easybuild/easyconfigs/f/Fiona/Fiona-1.8.21-foss-2022a.eb b/easybuild/easyconfigs/f/Fiona/Fiona-1.10.1-foss-2024a.eb
index a1a8ffdd7e..06bc9936c3 100644
--- a/easybuild/easyconfigs/f/Fiona/Fiona-1.8.21-foss-2022a.eb
+++ b/easybuild/easyconfigs/f/Fiona/Fiona-1.10.1-foss-2024a.eb
@@ -1,7 +1,7 @@
 easyblock = 'PythonBundle'
 
 name = 'Fiona'
-version = '1.8.21'
+version = '1.10.1'
 
 homepage = 'https://github.com/Toblerity/Fiona'
 description = """Fiona is designed to be simple and dependable. It focuses on reading and writing data
@@ -10,14 +10,19 @@ mappings, and iterators instead of classes specific to OGR. Fiona can read and w
 multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS
 packages such as pyproj, Rtree, and Shapely."""
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2024a'}
+
+builddependencies = [
+    ('Cython', '3.0.10'),
+]
 
 dependencies = [
-    ('Python', '3.10.4'),
-    ('GDAL', '3.5.0'),
-    ('Shapely', '1.8.2'),  # optional for 'calc' extras
+    ('Python', '3.12.3'),
+    ('GDAL', '3.10.0'),
+    ('Shapely', '2.0.6'),  # optional for 'calc' extras
 ]
 
+sanity_pip_check = True
 use_pip = True
 
 exts_list = [
@@ -27,22 +32,20 @@ exts_list = [
     ('click-plugins', '1.1.1', {
         'checksums': ['46ab999744a9d831159c3411bb0c79346d94a444df9a3a3742e9ed63645f264b'],
     }),
-    ('munch', '2.5.0', {
-        'checksums': ['2d735f6f24d4dba3417fa448cae40c6e896ec1fdab6cdb5e6510999758a4dbd2'],
+    ('munch', '4.0.0', {
+        'checksums': ['542cb151461263216a4e37c3fd9afc425feeaf38aaa3025cd2a981fadb422235'],
     }),
-    (name, version, {
-        'checksums': ['3a0edca2a7a070db405d71187214a43d2333a57b4097544a3fcc282066a58bfc'],
+    ('%(namelower)s', version, {
         'use_pip_extras': 'calc',
+        'checksums': ['b00ae357669460c6491caba29c2022ff0acfcbde86a95361ea8ff5cd14a86b68'],
     }),
 ]
 
-sanity_pip_check = True
-
 sanity_check_paths = {
     'files': ['bin/fio'],
     'dirs': ['lib/python%(pyshortver)s/site-packages'],
 }
 
-sanity_check_commands = ["fio --help"]
+sanity_check_commands = ['fio --help']
 
 moduleclass = 'data'

…asyconfigs into Fiona-2024a

branfosj · 2024-12-07T08:57:58Z

@boegelbot please test @ generoso

boegelbot · 2024-12-07T09:00:10Z

@branfosj: Request for testing this PR well received on login1

PR test command 'EB_PR=21614 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21614 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14830

Test results coming soon (I hope)...

- notification for comment with ID 2525040210 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

branfosj · 2024-12-07T09:01:59Z

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
bear-pg0210u03b.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8480CL (sapphirerapids), Python 3.6.8
See https://gist.github.com/branfosj/2ffc56af823d79924c27debb803aa4c8 for a full test report.

branfosj · 2024-12-07T09:03:25Z

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/3d1f9facfb372b7448e6b1d79378232a for a full test report.

boegelbot · 2024-12-07T09:04:43Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/f9ad1ca062d47794d847f3770214ce69 for a full test report.

branfosj · 2024-12-07T09:04:51Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-12-07T09:10:09Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21614 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21614 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5410

Test results coming soon (I hope)...

- notification for comment with ID 2525042528 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-12-07T09:13:05Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.19
See https://gist.github.com/boegelbot/c131970e02227442684897cba44d03cb for a full test report.

branfosj · 2024-12-07T09:26:03Z

Going in, thanks @maxim-masterov!

Add Fiona for 2024a

3d24b89

maxim-masterov added update 2024a issues & PRs related to 2024a common toolchains labels Oct 10, 2024

Update Fiona-1.10.1-foss-2024a.eb

829a7d4

maxim-masterov mentioned this pull request Dec 2, 2024

{data,numlib}[foss/2024a] Armadillo v14.0.3, arpack-ng v3.9.1 #21608

Merged

Update Fiona-1.10.1-foss-2024a.eb

f770977

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

18817ee

…asyconfigs into Fiona-2024a

branfosj approved these changes Dec 7, 2024

View reviewed changes

branfosj added this to the release after 4.9.4 milestone Dec 7, 2024

branfosj merged commit 1803449 into easybuilders:develop Dec 7, 2024
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{data}[foss/2024a] Fiona v1.10.1 #21614

{data}[foss/2024a] Fiona v1.10.1 #21614

maxim-masterov commented Oct 10, 2024 •

edited

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branfosj commented Dec 7, 2024

{data}[foss/2024a] Fiona v1.10.1 #21614

{data}[foss/2024a] Fiona v1.10.1 #21614

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maxim-masterov commented Oct 10, 2024 • edited Loading

github-actions bot commented Dec 6, 2024

Updated software Fiona-1.10.1-foss-2024a.eb

branfosj commented Dec 7, 2024

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branfosj commented Dec 7, 2024

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branfosj commented Dec 7, 2024

maxim-masterov commented Oct 10, 2024 •

edited

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Updated software `Fiona-1.10.1-foss-2024a.eb`