Merge pull request #21708 from verdurin/20241021092149_new_pr_snptest256

{bio}[system/system] SNPTEST v2.5.6

easybuild/easyconfigs/s/SNPTEST/SNPTEST-2.5.6.eb

@@ -0,0 +1,33 @@
+easyblock = 'Tarball'
+
+name = 'SNPTEST'
+version = '2.5.6'
+
+homepage = 'https://www.chg.ox.ac.uk/~gav/snptest/'
+description = """SNPTEST is a program for the analysis of single SNP association in genome-wide studies.
+ The tests implemented include
+
+ Binary (case-control) phenotypes, single and multiple quantitative phenotypes
+ Bayesian and Frequentist tests
+ Ability to condition upon an arbitrary set of covariates and/or SNPs.
+ Various different methods for the dealing with imputed SNPs.
+"""
+
+toolchain = SYSTEM
+
+source_urls = ['https://www.well.ox.ac.uk/~gav/resources/']
+sources = ['snptest_v2.5.6_CentOS_Linux7.8-x86_64_dynamic.tgz']
+checksums = ['c2c829def961dd2f6377c388d8aa22cab17945961c47e39c4a94493466c0a52e']
+
+postinstallcmds = ["cd %(installdir)s && ln -s snptest_v2.5.6 snptest"]
+
+sanity_check_paths = {
+    'files': ['LICENCE'],
+    'dirs': ['doc', 'example'],
+}
+
+modextrapaths = {'PATH': ''}
+
+sanity_check_commands = ["snptest -help"]
+
+moduleclass = 'bio'