Skip to content

Commit

Permalink
Fix code style issues in existing ECs
Browse files Browse the repository at this point in the history
These make the test fail, so fix them.
  • Loading branch information
Flamefire committed Sep 13, 2024
1 parent 87dea8f commit 3e3727a
Show file tree
Hide file tree
Showing 58 changed files with 139 additions and 86 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -5,10 +5,10 @@ version = '11-4-2011'
versionsuffix = '-Python-%(pyver)s'

homepage = 'http://tda.gatech.edu/software/cpb/index.html'
description = """CPB is a novel two-step Pearson correlation based biclustering approach to mine genes that are co-regulated with
a given reference gene in order to discover genes that function in a common biological process.
In the first step, the algorithm identifies subsets of genes with high correlation, reducing false negatives
with a nonparametric filtering scheme.
description = """CPB is a novel two-step Pearson correlation based biclustering approach to mine genes that are
co-regulated with a given reference gene in order to discover genes that function in a common biological process.
In the first step, the algorithm identifies subsets of genes with high correlation, reducing false negatives
with a nonparametric filtering scheme.
In the second step, biclusters from multiple datasets are used to extract and rank gene correlation information."""

toolchain = {'name': 'foss', 'version': '2017a'}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,10 @@ version = '5.3.0'
versionsuffix = '-centos4_x86_64'

homepage = 'http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki'
description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data."""
description = """\
FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.
"""

toolchain = SYSTEM

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,10 @@ version = '6.0.0'
versionsuffix = '-centos6_x86_64'

homepage = 'http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki'
description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data."""
description = """\
FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.
"""

toolchain = SYSTEM

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,10 @@ version = '6.0.1'
versionsuffix = '-centos6_x86_64'

homepage = 'https://surfer.nmr.mgh.harvard.edu/'
description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data."""
description = """\
FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.
"""

toolchain = SYSTEM

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,10 @@ version = '7.1.1'
versionsuffix = '-centos6_x86_64'

homepage = 'https://surfer.nmr.mgh.harvard.edu/'
description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data."""
description = """\
FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.
"""

toolchain = SYSTEM

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,10 @@ version = '7.1.1'
versionsuffix = '-centos7_x86_64'

homepage = 'https://surfer.nmr.mgh.harvard.edu/'
description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data."""
description = """\
FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.
"""

toolchain = SYSTEM

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,10 @@ version = '7.1.1'
versionsuffix = '-centos8_x86_64'

homepage = 'https://surfer.nmr.mgh.harvard.edu/'
description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data."""
description = """\
FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data.
FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.
"""

toolchain = SYSTEM

Expand Down
4 changes: 2 additions & 2 deletions easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.2.0.eb
Original file line number Diff line number Diff line change
Expand Up @@ -43,9 +43,9 @@ dependencies = [
configopts = '--disable-orbit '

sanity_check_paths = {
'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] +
'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] +
['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] +
['lib/libgconf-2.%s' % x for x in['a', 'so']],
['lib/libgconf-2.%s' % x for x in ['a', 'so']],
'dirs': ['include', 'share']
}

Expand Down
4 changes: 2 additions & 2 deletions easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.3.0.eb
Original file line number Diff line number Diff line change
Expand Up @@ -43,9 +43,9 @@ dependencies = [
configopts = '--disable-orbit '

sanity_check_paths = {
'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] +
'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] +
['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] +
['lib/libgconf-2.%s' % x for x in['a', 'so']],
['lib/libgconf-2.%s' % x for x in ['a', 'so']],
'dirs': ['include', 'share']
}

Expand Down
4 changes: 2 additions & 2 deletions easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2016a.eb
Original file line number Diff line number Diff line change
Expand Up @@ -26,9 +26,9 @@ dependencies = [
configopts = '--disable-orbit '

sanity_check_paths = {
'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] +
'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] +
['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] +
['lib/libgconf-2.%s' % x for x in['a', 'so']],
['lib/libgconf-2.%s' % x for x in ['a', 'so']],
'dirs': ['include', 'share']
}

Expand Down
4 changes: 2 additions & 2 deletions easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2018b.eb
Original file line number Diff line number Diff line change
Expand Up @@ -26,9 +26,9 @@ dependencies = [
configopts = '--disable-orbit '

sanity_check_paths = {
'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] +
'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] +
['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] +
['lib/libgconf-2.%s' % x for x in['a', 'so']],
['lib/libgconf-2.%s' % x for x in ['a', 'so']],
'dirs': ['include', 'share']
}

Expand Down
4 changes: 2 additions & 2 deletions easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016a.eb
Original file line number Diff line number Diff line change
Expand Up @@ -26,9 +26,9 @@ dependencies = [
configopts = '--disable-orbit '

sanity_check_paths = {
'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] +
'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] +
['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] +
['lib/libgconf-2.%s' % x for x in['a', 'so']],
['lib/libgconf-2.%s' % x for x in ['a', 'so']],
'dirs': ['include', 'share']
}

Expand Down
4 changes: 2 additions & 2 deletions easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016b.eb
Original file line number Diff line number Diff line change
Expand Up @@ -26,9 +26,9 @@ dependencies = [
configopts = '--disable-orbit '

sanity_check_paths = {
'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] +
'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] +
['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] +
['lib/libgconf-2.%s' % x for x in['a', 'so']],
['lib/libgconf-2.%s' % x for x in ['a', 'so']],
'dirs': ['include', 'share']
}

Expand Down
4 changes: 2 additions & 2 deletions easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb
Original file line number Diff line number Diff line change
Expand Up @@ -26,9 +26,9 @@ dependencies = [
configopts = '--disable-orbit '

sanity_check_paths = {
'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] +
'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] +
['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] +
['lib/libgconf-2.%s' % x for x in['a', 'so']],
['lib/libgconf-2.%s' % x for x in ['a', 'so']],
'dirs': ['include', 'share']
}

Expand Down
4 changes: 2 additions & 2 deletions easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017b.eb
Original file line number Diff line number Diff line change
Expand Up @@ -26,9 +26,9 @@ dependencies = [
configopts = '--disable-orbit '

sanity_check_paths = {
'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] +
'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] +
['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] +
['lib/libgconf-2.%s' % x for x in['a', 'so']],
['lib/libgconf-2.%s' % x for x in ['a', 'so']],
'dirs': ['include', 'share']
}

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '0.9'
versionsuffix = '-Python-%(pyver)s'

homepage = 'https://github.com/ListerLab/HOME'
description = """HOME (histogram of methylation) is a python package for differential methylation region (DMR) identification.
description = """\
HOME (histogram of methylation) is a python package for differential methylation region (DMR) identification.
The method uses histogram of methylation features and the linear Support Vector Machine (SVM) to identify DMRs
from whole genome bisulfite sequencing (WGBS) data."""

Expand Down
7 changes: 4 additions & 3 deletions easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-foss-2016a.eb
Original file line number Diff line number Diff line change
Expand Up @@ -2,9 +2,10 @@ name = 'Hypre'
version = '2.11.1'

homepage = "https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html"
description = """Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers.
The problems of interest arise in the simulation codes being developed at LLNL and elsewhere
to study physical phenomena in the defense, environmental, energy, and biological sciences."""
description = """\
Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers.
The problems of interest arise in the simulation codes being developed at LLNL and elsewhere
to study physical phenomena in the defense, environmental, energy, and biological sciences."""

toolchain = {'name': 'foss', 'version': '2016a'}
toolchainopts = {'pic': True}
Expand Down
7 changes: 4 additions & 3 deletions easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-intel-2016a.eb
Original file line number Diff line number Diff line change
Expand Up @@ -2,9 +2,10 @@ name = 'Hypre'
version = '2.11.1'

homepage = "https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html"
description = """Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers.
The problems of interest arise in the simulation codes being developed at LLNL and elsewhere
to study physical phenomena in the defense, environmental, energy, and biological sciences."""
description = """\
Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers.
The problems of interest arise in the simulation codes being developed at LLNL and elsewhere
to study physical phenomena in the defense, environmental, energy, and biological sciences."""

toolchain = {'name': 'intel', 'version': '2016a'}
toolchainopts = {'pic': True}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.0.0'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.0.1'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.0.2'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.0.3'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.0.4'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.0'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.0'
versionsuffix = '-Python-%(pyver)s'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = {'name': 'intel', 'version': '2016a'}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.1'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.1'
versionsuffix = '-Python-%(pyver)s'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = {'name': 'intel', 'version': '2016a'}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.2'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.2'
versionsuffix = '-Python-%(pyver)s'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = {'name': 'intel', 'version': '2016a'}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.3'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.3'
versionsuffix = '-Python-%(pyver)s'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = {'name': 'intel', 'version': '2016b'}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.4'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.1.4'
versionsuffix = '-Python-%(pyver)s'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = {'name': 'intel', 'version': '2016b'}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.2.0'
versionsuffix = '-cli'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = SYSTEM
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ version = '3.2.0'
versionsuffix = '-Python-%(pyver)s'

homepage = 'https://github.com/hpcugent/hanythingondemand'
description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
description = description = """\
HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster.
It uses the Torque resource manager to do node allocation."""

toolchain = {'name': 'intel', 'version': '2016b'}
Expand Down
Loading

0 comments on commit 3e3727a

Please sign in to comment.