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adding easyconfigs: Stacks-2.68-foss-2023a.eb
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PetrKralCZ committed Nov 4, 2024
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29 changes: 29 additions & 0 deletions easybuild/easyconfigs/s/Stacks/Stacks-2.68-foss-2023a.eb
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easyblock = 'ConfigureMake'

name = 'Stacks'
version = '2.68'

homepage = 'https://catchenlab.life.illinois.edu/stacks/'
description = """Stacks is a software pipeline for building loci from short-read sequences, such as those generated on
the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq,
for the purpose of building genetic maps and conducting population genomics and phylogeography.
"""

toolchain = {'name': 'foss', 'version': '2023a'}

source_urls = ['https://catchenlab.life.illinois.edu/stacks/source/']
sources = [SOURCELOWER_TAR_GZ]
checksums = ['9dc51ea356d60eb4557b0b2d1a8854aafae492aed87f974e0249cc09aa5e7650']

dependencies = [
('zlib', '1.2.13'),
]

sanity_check_paths = {
'files': ['bin/clone_filter', 'bin/cstacks', 'bin/gstacks', 'bin/kmer_filter', 'bin/phasedstacks',
'bin/populations', 'bin/process_radtags', 'bin/process_shortreads', 'bin/sstacks',
'bin/tsv2bam', 'bin/ustacks'],
'dirs': [],
}

moduleclass = 'bio'

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