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@dholab

David H. O'Connor Lab at University of Wisconsin—Madison

Located in University of Wisconsin—Madison's AIDS Vaccine Research Laboratory

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  1. dairy-hpai-monitoring dairy-hpai-monitoring Public

    Real-Time Monitoring of HPAI Detections in One or More Dairy Products in the United States

    Python 7 1

  2. SNAILS SNAILS Public

    Small Nucleic Acid Instrument for Long Sequences

    Python 3

  3. air-metagenomics air-metagenomics Public archive

    Analysis Pipeline for Minor and Ramuta et al. 2023: Metagenomic sequencing detects human respiratory and enteric viruses in air samples collected from congregate settings

    Nextflow 2

  4. Shortreed-et-al-Supplemental-Code Shortreed-et-al-Supplemental-Code Public

    Supplemental Information for Characterization of 100 extended major histocompatibility complex haplotypes in Indonesian cynomolgus macaques

    Python 1

  5. MHC_MiSeq_Genotyping_Databases MHC_MiSeq_Genotyping_Databases Public

  6. E484T-visualizations E484T-visualizations Public

    Forked from nrminor/E484T-visualizations

    Data visualization for manuscript on persistent infection that led to globally unique E484T mutation

    R

Repositories

Showing 10 of 28 repositories
  • allele-discovery Public

    A Snakemake workflow for discovering novel alleles with PacBio HiFi reads

    dholab/allele-discovery’s past year of commit activity
    Python 0 MIT 1 2 0 Updated Dec 23, 2024
  • dairy-hpai-monitoring Public

    Real-Time Monitoring of HPAI Detections in One or More Dairy Products in the United States

    dholab/dairy-hpai-monitoring’s past year of commit activity
    Python 7 GPL-3.0 1 1 0 Updated Dec 18, 2024
  • SRA_wastewater_lineages Public Forked from DABAKER165/SRA_wastewater_lineages

    Legacy repository for the SRA cryptic lineage finder featured in Suarez et al. 2025

    dholab/SRA_wastewater_lineages’s past year of commit activity
    Python 0 1 6 0 Updated Dec 18, 2024
  • air_qpcr_helpeR Public

    Shiny apps that help work with virus qPCR data from air sample cartridges

    dholab/air_qpcr_helpeR’s past year of commit activity
    R 0 0 0 0 Updated Dec 5, 2024
  • Library-Rapid-Antigen-Test-Manuscript Public
    dholab/Library-Rapid-Antigen-Test-Manuscript’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Nov 12, 2024
  • Lail-et-al-2024-analysis-pipeline Public archive Forked from nrminor/oneroof

    The version of the sequence analysis pipeline used in the preparation of Lail et al. 2024.

    dholab/Lail-et-al-2024-analysis-pipeline’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Oct 10, 2024
  • iWES-genotyper Public
    dholab/iWES-genotyper’s past year of commit activity
    Python 0 0 0 0 Updated Jul 26, 2024
  • IPD-ref-generator Public Forked from nrminor/IPD-ref-generator

    Workflow for generating useful immunological gene allele databases

    dholab/IPD-ref-generator’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jun 11, 2024
  • embl-my-gbk Public Forked from nrminor/embl-my-gbk

    Convert a Genbank file with many extraneous Geneious annotations to EMBL format (even with of strict requirements as IPD)

    dholab/embl-my-gbk’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Mar 22, 2024
  • IPD-converter Public archive

    Nextflow pipeline for converting annotated, genbank-formatted novel allele sequences to Immuno Polymorphism Database format

    dholab/IPD-converter’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Mar 10, 2024
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